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03.11.2025: Autoregressive Molecule Generation, Geometry-Aware Protein Modeling, and Ultra-Efficient Biological Information Processing
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
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0:00 Molecular glues stabilize water-mediated hydrogen bonds in ternary complexes (https://arxiv.org/pdf/2510.26806.pdf)
4:34 GeoPep: A geometry-aware masked language model for protein-peptide binding site prediction (https://arxiv.org/pdf/2510.27040.pdf)
8:57 The Demon Hidden Behind Life's Ultra-Energy-Efficient Information Processing -- Demonstrated by Biological Molecular Motors (https://arxiv.org/pdf/2510.27212.pdf)
12:50 InertialAR: Autoregressive 3D Molecule Generation with Inertial Frames (https://arxiv.org/pdf/2510.27497.pdf)
17:17 MolChord: Structure-Sequence Alignment for Protein-Guided Drug Design (https://arxiv.org/pdf/2510.27671.pdf)
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Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader
View all episodes
By This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 Molecular glues stabilize water-mediated hydrogen bonds in ternary complexes (https://arxiv.org/pdf/2510.26806.pdf)
4:34 GeoPep: A geometry-aware masked language model for protein-peptide binding site prediction (https://arxiv.org/pdf/2510.27040.pdf)
8:57 The Demon Hidden Behind Life's Ultra-Energy-Efficient Information Processing -- Demonstrated by Biological Molecular Motors (https://arxiv.org/pdf/2510.27212.pdf)
12:50 InertialAR: Autoregressive 3D Molecule Generation with Inertial Frames (https://arxiv.org/pdf/2510.27497.pdf)
17:17 MolChord: Structure-Sequence Alignment for Protein-Guided Drug Design (https://arxiv.org/pdf/2510.27671.pdf)
----------------------------------------
Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader