In this episode, <a href="https://www.cs.cmu.edu/~mingfus/">Mingfu Shao</a> talks about
<a href="https://github.com/Kingsford-Group/scallop">Scallop</a>, an accurate reference-based transcript assembler.

 

 
 Links:

<ul>
 <li><a href="http://www.biorxiv.org/content/early/2017/04/03/123612">The preprint about Scallop</a></li>
 <li><a href="http://biorxiv.org/content/early/2016/11/16/087759">The preprint about flow decomposition</a></li>
 <li><a href="http://www.birs.ca/events/2017/5-day-workshops/17w5131/videos/watch/201703301037-Langmead.html">The video of a talk by Ben Langmead about Rail-RNA</a></li>
 <li><a href="http://biorxiv.org/content/early/2015/08/11/019067">The preprint about Rail-RNA</a></li>
</ul>

 

 
 If you enjoyed this episode, please consider supporting the podcast on <a href="https://www.patreon.com/bioinfochat">Patreon</a>.

In this episode, Mingfu Shao talks about Scallop, an accurate reference-based transcript assembler. Links: The preprint about Scallop The preprint about flow decomposition The video of a talk by Ben Langmead about Rail-RNA The preprint about Rail-RNA If you enjoyed this episode, please consider supporting the podcast on Patreon.

In this episode, <a href="https://www.cs.cmu.edu/~mingfus/" rel="noopener noreferrer">Mingfu Shao</a> talks about
<a href="https://github.com/Kingsford-Group/scallop" rel="noopener noreferrer">Scallop</a>, an accurate reference-based transcript assembler.

 

 
 Links:

<ul>
 <li><a href="http://www.biorxiv.org/content/early/2017/04/03/123612" rel="noopener noreferrer">The preprint about Scallop</a></li>
 <li><a href="http://biorxiv.org/content/early/2016/11/16/087759" rel="noopener noreferrer">The preprint about flow decomposition</a></li>
 <li><a href="http://www.birs.ca/events/2017/5-day-workshops/17w5131/videos/watch/201703301037-Langmead.html" rel="noopener noreferrer">The video of a talk by Ben Langmead about Rail-RNA</a></li>
 <li><a href="http://biorxiv.org/content/early/2015/08/11/019067" rel="noopener noreferrer">The preprint about Rail-RNA</a></li>
</ul>

 

 
 If you enjoyed this episode, please consider supporting the podcast on <a href="https://www.patreon.com/bioinfochat" rel="noopener noreferrer">Patreon</a>.

#1 Transcriptome assembly and Scallop with Mingfu Shao

A podcast about computational biology, bioinformatics, and next generation sequencing.

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#1 Transcriptome assembly and Scallop with Mingfu Shao

#1 Transcriptome assembly and Scallop with Mingfu Shao