the bioinformatics chat

#10 Spatially variable genes and SpatialDE with Valentine Svensson

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Valentine Svensson

explains how he analyzes spatially-annotated single cell gene expression data
using Gaussian processes.

Links:

  • Valentine’s preprint, “SpatialDE - Identification Of Spatially Variable Genes”
  • SpatialDE code on GitHub
  • Valentine’s personal page
  • The Integrative Biology & Medicine conference

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