Sign up to save your podcasts
Or
Share 11.12.2025: Protein Language Models, Molecular Transformers, and Knowledge Graphs for Improved Molecular Discovery
Share to email
Share to Facebook
Share to X
Share to email
Share to Facebook
Share to X
Or
11.12.2025: Protein Language Models, Molecular Transformers, and Knowledge Graphs for Improved Molecular Discovery
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 Self Distillation Fine-Tuning of Protein Language Models Improves Versatility in Protein Design (https://arxiv.org/pdf/2512.09329.pdf)
3:55 KGOT: Unified Knowledge Graph and Optimal Transport Pseudo-Labeling for Molecule-Protein Interaction Prediction (https://arxiv.org/pdf/2512.09365.pdf)
8:46 Toward Closed-loop Molecular Discovery via Language Model, Property Alignment and Strategic Search (https://arxiv.org/pdf/2512.09566.pdf)
13:31 Circuits, Features, and Heuristics in Molecular Transformers (https://arxiv.org/pdf/2512.09757.pdf)
18:07 Exploring Protein Language Model Architecture-Induced Biases for Antibody Comprehension (https://arxiv.org/pdf/2512.09894.pdf)
----------------------------------------
Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader
View all episodes
By This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 Self Distillation Fine-Tuning of Protein Language Models Improves Versatility in Protein Design (https://arxiv.org/pdf/2512.09329.pdf)
3:55 KGOT: Unified Knowledge Graph and Optimal Transport Pseudo-Labeling for Molecule-Protein Interaction Prediction (https://arxiv.org/pdf/2512.09365.pdf)
8:46 Toward Closed-loop Molecular Discovery via Language Model, Property Alignment and Strategic Search (https://arxiv.org/pdf/2512.09566.pdf)
13:31 Circuits, Features, and Heuristics in Molecular Transformers (https://arxiv.org/pdf/2512.09757.pdf)
18:07 Exploring Protein Language Model Architecture-Induced Biases for Antibody Comprehension (https://arxiv.org/pdf/2512.09894.pdf)
----------------------------------------
Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader