Machine Learning in Computational Biology: Daily Digest

13.11.2025: Controllable Protein Design, Autonomous Bio AI Agents, and Verified Confidence Estimation


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0:00 Compact Artificial Neural Network Models for Predicting Protein Residue - RNA Base Binding (https://arxiv.org/pdf/2511.08648.pdf)
4:16 Bio AI Agent: A Multi-Agent Artificial Intelligence System for Autonomous CAR-T Cell Therapy Development with Integrated Target Discovery, Toxicity Prediction, and Rational Molecular Design (https://arxiv.org/pdf/2511.08649.pdf)
9:27 Measuring irreversibility in stochastic systems by categorizing single-molecule displacements (https://arxiv.org/pdf/2511.09183.pdf)
14:16 Controllable protein design through Feynman-Kac steering (https://arxiv.org/pdf/2511.09216.pdf)
18:16 Taming Object Hallucinations with Verified Atomic Confidence Estimation (https://arxiv.org/pdf/2511.09228.pdf)
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