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19.11.2025: Bayesian Flow Networks, Crystal and Molecule Generation, and Explainable Protein and DNA Modeling
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
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0:00 XAI-Driven Deep Learning for Protein Sequence Functional Group Classification (https://arxiv.org/pdf/2511.13791.pdf)
4:42 Structural Flexibility of the TCF7L2-DNA Complex with the Type 2 Diabetes SNP rs7903146 (https://arxiv.org/pdf/2511.13916.pdf)
9:01 MiAD: Mirage Atom Diffusion for De Novo Crystal Generation (https://arxiv.org/pdf/2511.14426.pdf)
13:34 Full Atom Peptide Design via Riemannian Euclidean Bayesian Flow Networks (https://arxiv.org/pdf/2511.14516.pdf)
18:36 Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models (https://arxiv.org/pdf/2511.14559.pdf)
23:44 Near-Lossless Model Compression Enables Longer Context Inference in DNA Large Language Models (https://arxiv.org/pdf/2511.14694.pdf)
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Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader
View all episodes
By This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 XAI-Driven Deep Learning for Protein Sequence Functional Group Classification (https://arxiv.org/pdf/2511.13791.pdf)
4:42 Structural Flexibility of the TCF7L2-DNA Complex with the Type 2 Diabetes SNP rs7903146 (https://arxiv.org/pdf/2511.13916.pdf)
9:01 MiAD: Mirage Atom Diffusion for De Novo Crystal Generation (https://arxiv.org/pdf/2511.14426.pdf)
13:34 Full Atom Peptide Design via Riemannian Euclidean Bayesian Flow Networks (https://arxiv.org/pdf/2511.14516.pdf)
18:36 Apo2Mol: 3D Molecule Generation via Dynamic Pocket-Aware Diffusion Models (https://arxiv.org/pdf/2511.14559.pdf)
23:44 Near-Lossless Model Compression Enables Longer Context Inference in DNA Large Language Models (https://arxiv.org/pdf/2511.14694.pdf)
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Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader