Sign up to save your podcasts
Or
Share 25.11.2025: Multimodal Molecular Representations, Diffusion-Based Generative Models, and Mechanistic Protein Design
Share to email
Share to Facebook
Share to X
Share to email
Share to Facebook
Share to X
Or
25.11.2025: Multimodal Molecular Representations, Diffusion-Based Generative Models, and Mechanistic Protein Design
This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 RTMol: Rethinking Molecule-text Alignment in a Round-trip View (https://arxiv.org/pdf/2511.12135.pdf)
4:26 Diffusion Models are Molecular Dynamics Simulators (https://arxiv.org/pdf/2511.17741.pdf)
8:42 TRIDENT: A Trimodal Cascade Generative Framework for Drug and RNA-Conditioned Cellular Morphology Synthesis (https://arxiv.org/pdf/2511.18287.pdf)
13:49 Pre-training Graph Neural Networks on 2D and 3D Molecular Structures by using Multi-View Conditional Information Bottleneck (https://arxiv.org/pdf/2511.18404.pdf)
18:46 A universal phase-plane model for in vivo protein aggregation (https://arxiv.org/pdf/2511.18893.pdf)
23:46 Torsion-Space Diffusion for Protein Backbone Generation with Geometric Refinement (https://arxiv.org/pdf/2511.19184.pdf)
27:38 Beyond Protein Language Models: An Agentic LLM Framework for Mechanistic Enzyme Design (https://arxiv.org/pdf/2511.19423.pdf)
----------------------------------------
Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader
View all episodes
By This podcast is brought to you by the Oliver Laboratory at Vanderbilt University.
----------------------------------------
0:00 RTMol: Rethinking Molecule-text Alignment in a Round-trip View (https://arxiv.org/pdf/2511.12135.pdf)
4:26 Diffusion Models are Molecular Dynamics Simulators (https://arxiv.org/pdf/2511.17741.pdf)
8:42 TRIDENT: A Trimodal Cascade Generative Framework for Drug and RNA-Conditioned Cellular Morphology Synthesis (https://arxiv.org/pdf/2511.18287.pdf)
13:49 Pre-training Graph Neural Networks on 2D and 3D Molecular Structures by using Multi-View Conditional Information Bottleneck (https://arxiv.org/pdf/2511.18404.pdf)
18:46 A universal phase-plane model for in vivo protein aggregation (https://arxiv.org/pdf/2511.18893.pdf)
23:46 Torsion-Space Diffusion for Protein Backbone Generation with Geometric Refinement (https://arxiv.org/pdf/2511.19184.pdf)
27:38 Beyond Protein Language Models: An Agentic LLM Framework for Mechanistic Enzyme Design (https://arxiv.org/pdf/2511.19423.pdf)
----------------------------------------
Source code: https://github.com/OliverLaboratory/arxivreader
Contact: oliverlaboratory.com
Source code: https://github.com/OliverLaboratory/arxivreader