the bioinformatics chat

#47 Reproducible pipelines and NGLess with Luis Pedro Coelho

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NGLess is a programming language specifically

targeted at next generation sequencing (NGS) data processing.
In this episode we chat with its main developer, Luis Pedro
Coelho, about the benefits of domain-specific
languages, pros and cons of Haskell in bioinformatics, reproducibility, and of
course NGLess itself.

Links:

  • NGLess on GitHub
  • NG-meta-profiler: fast processing of metagenomes using NGLess, a
    • domain-specific language
    (Luis Pedro Coelho, Renato Alves, Paulo Monteiro, Jaime Huerta-Cepas, Ana Teresa Freitas, Peer Bork)

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