the bioinformatics chat

#68 Phylogenetic inference from raw reads and Read2Tree with David Dylus

Listen Later

In this episode,

David Dylus talks about
Read2Tree,
a tool that builds alignment matrices and phylogenetic trees from raw
sequencing reads.
By leveraging the database of orthologous genes called OMA, Read2Tree bypasses traditional, time-consuming steps such as genome assembly, annotation and all-versus-all sequence comparisons.

Links:

  • Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree
    • (David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz)
  • Background story
  • Read2Tree on GitHub
  • OMA browser
  • The Guardian’s podcast about Victoria Amelina and Volodymyr Vakulenko

    • If you enjoyed this episode, please consider supporting the podcast on Patreon.

    ...more
    View all episodesView all episodes
    Download on the App Store
    the bioinformatics chatBy Roman Cheplyaka
    • 4.8
    • 4.8
    • 4.8
    • 4.8
    • 4.8

    4.8

    34 ratings

    More shows like the bioinformatics chat

    View all
    Radiolab by WNYC Studios

    Radiolab

    43,969 Listeners

    This American Life by This American Life

    This American Life

    90,949 Listeners

    The Bioinformatics and Beyond Podcast by Leo Elworth

    The Bioinformatics and Beyond Podcast

    10 Listeners

    If Books Could Kill by Michael Hobbes & Peter Shamshiri

    If Books Could Kill

    8,874 Listeners

    the bioinformatics lab by The Bioinformatics Lab

    the bioinformatics lab

    0 Listeners