The Nextflow Podcast

Episode 38: Seqera Pipelines & Seqera Containers


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Evan Floden (CEO and co-founder of Seqera) joins Phil Ewels (Product Manager for OSS at Seqera) to talk about two of the big announcements at the recent Nextflow Summit Boston 2024 - Seqera Pipelines and Seqera Containers.

We dive into what these two new community offerings are, why we built them and how they work.
Links:

  • https://seqera.io/pipelines/
  • https://seqera.io/containers/
  • Announcement blog post
  • Nextflow Summit Boston 2024 agenda
  • Summit YouTube playlist
  • Nextflow 24.04 blog post
  • Timeline:

    00:00 - Introduction

    00:37 - Nextflow Summit Boston 2024

    01:14 - Summit talks available online

    01:57 - Summit announcements


    04:32 - Seqera Pipelines - motivations

    05:59 - Seqera Pipelines - first look

    06:48 - Testing requirements for community pipelines

    10:05 - How we tested pipelines

    11:53 - SRA-Explorer tangent


    12:34 - Seqera Pipelines - live demo

    16:14 - Getting Nextflow launch commands

    19:12 - Seqera Containers - intro

    24:03 - Seqera Containers - live demo

    27:13 - Containers - ARM cpu arch builds

    28:33 - Singularity containers

    29:09 - Wave CLI

    31:19 - Nextflow with Seqera Containers

    33:22 - Seqera Containers - future usage


    35:09 - Where to read more

    36:53 - Thank you to the community

    ...more
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