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[DISCLAIMER] - For the full visual experience, we recommend you tune in through our YouTube channel to see the presented slides.
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Abstract: In molecular discovery and drug design, structure-property relationships and activity landscapes are often qualitatively or quantitatively analyzed to guide the navigation of chemical space. The roughness (or smoothness) of these molecular property landscapes is one of their most studied geometric attributes, as it can characterize the presence of activity cliffs, with rougher landscapes generally expected to pose tougher optimization challenges. Here, we introduce a general, quantitative measure for describing the roughness of molecular property landscapes. The proposed roughness index (ROGI) is loosely inspired by the concept of fractal dimension and strongly correlates with the out-of-sample error achieved by machine learning models on numerous regression tasks.
Full Paper
Speakers: Matteo Aldeghi
Twitter Prudencio
Twitter Therence
Twitter Jonny
Twitter Valence Discovery
[DISCLAIMER] - For the full visual experience, we recommend you tune in through our YouTube channel to see the presented slides.
If you enjoyed this talk, consider joining the Molecular Modeling and Drug Discovery (M2D2) talks live.
Also consider joining the M2D2 Slack
Abstract: In molecular discovery and drug design, structure-property relationships and activity landscapes are often qualitatively or quantitatively analyzed to guide the navigation of chemical space. The roughness (or smoothness) of these molecular property landscapes is one of their most studied geometric attributes, as it can characterize the presence of activity cliffs, with rougher landscapes generally expected to pose tougher optimization challenges. Here, we introduce a general, quantitative measure for describing the roughness of molecular property landscapes. The proposed roughness index (ROGI) is loosely inspired by the concept of fractal dimension and strongly correlates with the out-of-sample error achieved by machine learning models on numerous regression tasks.
Full Paper
Speakers: Matteo Aldeghi
Twitter Prudencio
Twitter Therence
Twitter Jonny
Twitter Valence Discovery