The Swyx Mixtape

[Tech] AlphaFold - Demis Hassabis


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From Lex Fridman: https://lexfridman.com/demis-hassabis/
Transcripts from Karpathy's https://karpathy.ai/lexicap/0299-large.html

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00:37:13.160 
So let's go to the basic building blocks of biology

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00:37:16.960 
that I think is another angle at which you can start

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00:37:20.200 
to understand the human mind, the human body,

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00:37:22.280 
which is quite fascinating,

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00:37:23.400 
which is from the basic building blocks,

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00:37:26.640 
start to simulate, start to model

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00:37:28.960 
how from those building blocks,

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00:37:30.480 
you can construct bigger and bigger, more complex systems,

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00:37:33.080 
maybe one day the entirety of the human biology.

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00:37:35.820 
So here's another problem that thought

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00:37:39.680 
to be impossible to solve, which is protein folding.

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00:37:42.720 
And Alpha Fold or specifically Alpha Fold 2 did just that.

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00:37:48.840 
It solved protein folding.

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00:37:50.320 
I think it's one of the biggest breakthroughs,

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00:37:53.400 
certainly in the history of structural biology,

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00:37:55.140 
but in general in science,

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00:38:00.240 
maybe from a high level, what is it and how does it work?

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00:38:04.840 
And then we can ask some fascinating questions after.

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00:38:08.700 
Sure.

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00:38:09.980 
So maybe to explain it to people not familiar

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00:38:12.880 
with protein folding is, you know,

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00:38:14.400 
first of all, explain proteins, which is, you know,

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00:38:16.980 
proteins are essential to all life.

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00:38:18.840 
Every function in your body depends on proteins.

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00:38:21.520 
Sometimes they're called the workhorses of biology.

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00:38:23.920 
And if you look into them and I've, you know,

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00:38:25.340 
obviously as part of Alpha Fold,

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00:38:26.660 
I've been researching proteins and structural biology

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00:38:30.200 
for the last few years, you know,

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00:38:31.760 
they're amazing little bio nano machines proteins.

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00:38:34.760 
They're incredible if you actually watch little videos

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00:38:36.460 
of how they work, animations of how they work.

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00:38:39.000 
And proteins are specified by their genetic sequence

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00:38:42.600 
called the amino acid sequence.

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