Biopedia

Biopedia

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Biopedia episodes

  • 37- Metapopulations

    We're all familiar with populations, but what about a metapopulation? Put simply, these are populations of populations. Thanks to our sources and also my interpretation of the subject from back when I studied the concept, that's the notion we're going to unravel today...


    Sources for this episode:

    • Cain, M. L., Bowman, W. D. and Hacker, S. D. (2011), Ecology (Second Edition). Sunderland, Massachusetts, Sinauer Associated Ltd.
    • Thompson, J. N., Encyclopaedia Britannica (2016), Metapopulation (online) [Accessed 17/04/2021].
    • Wu, J., Encyclopaedia Britannica (2019), Patch dynamics (online) [Accessed 18/04/2021].
    • In this episode, I use an analogy from how I understood the concept from back when I was taught the concept at university, which I've signposted.
    • 5 min
    • 36- Hardy-Weinberg Equilibrium

      Back in the early 20th century, an English mathematician and a German scientist both independently came up with an equation to portray the frequency of different phenotypes in a hypothetical population. As we'll see today, this equation rests on some pretty big assumptions which effectively exclude evolution. Why is this useful? Well, because we can use it to see if evolution might be occurring...


      Sources for this episode:

      • Chen, B., Cole, J. W. and Grond-Ginsbach, C. (2017), Departure from Hardy Weinberg Equilibrium and Genotyping Error. Frontiers in Genetics 8(167).
      • Herron, J. C. and Freeman, S. (2015), Evolutionary Analysis (Fifth Edition, Global Edition). Harlow: Pearson Education Limited.
      • TED-Ed, YouTube (2012), Five fingers of evolution- Paul Anderson (online) [Accessed 18/04/2021].
      • Thain, M., and Hickman, M. (2014), The Penguin Dictionary of Biology, 11th edition. London: Penguin Publishing Group.
      • Author unknown, Wikipedia (date unknown), G. H. Hardy (online).
      • Author unknown, Wikipedia (date unknown), Wilhelm Weinberg (online).
      • 8 min
      • 35- Five Kingdoms, Three Domains

        Today, we're going to discuss classification. We're going to briefly skim over how people historically used to organise life, before the establishment of the prokaryote-eukaryote division which would stay in place until an American scientist called Carl Woese rocked the taxonomic boat...


        Sources for this episode:

        • Craine, A. G., Encyclopaedia Britannica (2020), Carl Woese (online) [Accessed 10/04/2021].
        • Author unknown, Wikipedia (date unknown), Taxonomy (online) [Accessed 10/04/2021].
        • Some of the discussion is based on my previous education on the subject and my completion of a Massive Open Online Course 'Emergence of Life' covering this topic in 2018.
        • 5 min
        • 34- The Tuatara

          On the show today, we discuss the tuatara- two (or possibly only one) species of reptile which are the final representatives of an ancient lineage. I didn't really go into it in the main episode, but there appears to be some debate about whether or not the tuatara is one species or two. All the sources I'd used in this week's episode list two species, but I afterwards discovered an article from the journal 'Conservation Genetics' which concluded that the tuatara should probably be thought of as one species instead of two. I might come back to it in a future episode.

          The paper in question is: Hay, J. M., Sarre, Stephen D., Lambert, D. M., Allendorf, F. W. and Daugherty, C. H. (2010), Genetic diversity and taxonomy: a reassessment of species designation in tuatara (Sphenodon: Reptilia), Conservation Genetics 11: 1063-1081.


          Sources for this episode:

          • Blythe, C. A., Encyclopaedia Britannica (2021), New Zealand (online) [Accessed 28/03/2021].
          • Campbell, N. A., Urry, L. A., Cain, M. L., Wasserman, S. A., Minorsky, P. V. and Reece, J. B. (2018), Biology: a global approach, 11th edition (Global Edition), Harlow, Pearson Education Limited.
          • Cooke, F., Dingle, H., Hutchinson, S., McKay, G., Schodde, R., Tait, N. and Vogt, R. (2008), The Encyclopedia of Animals: A Complete Visual Guide (p.370). Sydney: Weldon Owen Pty Ltd.
          • Thain, M. and Hickman, M. (2014), Dictionary of Biology (Eleventh Edition). London: Penguin Books Ltd.
          • Author unknown, Wikipedia (date unknown), Rhynchocephalia (online) [Accessed 28/03/2021].
          • 4 min
          • 33- Lethal Alleles

            At A Level, we are taught that dominant: recessive traits are in a 3:1 ratio for any trait in which only one gene encodes for it. However, it's not always that simple. Enter lethal alleles...


            Sources for this episode:

            • Gao, Z., Waggoner, D., Stephens, M., Ober, C. and Przeworski, M. (2015), An Estimate of the Average Number of Recessive Lethal Mutations Carried by Humans. Genetics 199: 1243- 1254.
            • Roos, R. A. C. (2010), Huntingdon's disease: a clinical review. Orphanet Journal of Rare Diseases 2010 5:40.
            • Author unknown, Wikipedia (date unknown), Lethal allele (online) [Accessed 26/03/2021].
            • Author unknown, Wikipedia (date unknown), Manx cat (online) [Accessed 27/03/2021].
            • 4 min
            • 32- Trisomies and Non-Disjunction

              Usually, we get two copies of each chromosome. However, the finely tuned process of meiosis and fertilisation can go awry such that a new zygote ends up with three copies. Depending on the chromosome, this can have serious consequences...


              Sources for this episode:

              • For an explanation of non-disjunction which I found helpful when I was at sixth form, see: Amoeba Sisters, YouTube (2017), Meiosis (Updated) (online) [Accessed 25/03/2021].
              • Xu, X., Zhang, X., Han, J.-W., Adamu, Y. and Zhang, B. (2020), Potential Increased Risk of Trisomy 18 Observed After a Fertilizer Warehouse Fire in Brazos County and TX. International Journal of Environmental Research and Public Health 17: 2561- 2571.
              • Author unknown, NHS (date unknown), Edwards' syndrome (trisomy 18) (online) [Accessed 25/03/2021].
              • 6 min
              • 31- Choanoflagellates

                We often think about animals as an insular group. However, as with any genetic grouping, animals do have close relatives. On the show today, we discuss choanoflagellates- considered the closest relatives to animals today, and possibly a good candidate for what the common ancestor of all animals would have looked like.


                Sources for this episode:

                • Campbell, N. A., Urry, L. A., Cain, M. L., Wasserman, S. A., Minorsky, P. V. and Reece, J. B. (2018), Biology: a global approach, 11th edition (Global Edition), Harlow, Pearson Education Limited.
                • The Editors, Encyclopaedia Britannica (2021), Choanoflagellate (online) [Accessed 13/03/2021].
                • Holland, S. M., Encyclopaedia Britannica (2021), Ordovician Period (online) [Accessed 13/03/2021].
                • Marshall, M., New Scientist (2009), Timeline: The evolution of life (online) [Accessed 13/03/2021].
                • Philippe, H., et al. (2009), Phylogenomics Revives Traditional Views on Deep Animal Relationships. Current Biology 19: 706- 712.
                • 6 min
                • 30- Measures of Diversity

                  Biodiversity is often mentioned as one concept in popular culture. However, it can be split into different components depending on who you ask. Today, we're going to explore two different ways of chopping biodiversity up.


                  Sources for this episode:

                  • Cain, M. L., Bowman, W. D. and Hacker, S. D. (2011), Ecology (2nd edition). Sunderland: Sinauer Associates Ltd.
                  • Author unknown, Wikipedia (date unknown), Gamma diversity (online) [Accessed 06/03/2021].
                  • There are ways of working out biodiversity values, which we won't discuss in this episode. For a formula for the Shannon-Weiner index of biodiversity (which I'm going to try and discuss in a future episode), see: Thain, M. and Hickman, M. (2014), Dictionary of Biology (Eleventh Edition). London: Penguin Books Ltd. For Simpson's biodiversity index, see: Fullick A., Locke, J. and Bircher, P. (2015), A Level Biology for OCR A. Oxford: Oxford University Press.

                    4 min
                  • 29- Sympatric Speciation

                    This week, we're going to discuss sympatric speciation- the counterpart to allopatric speciation where no physical barrier is needed.


                    Sources for this episode:

                    • Campbell, N. A., Urry, L. A., Cain, M. L., Wasserman, S. A., Minorsky, P. V. and Reece, J. B. (2018), Biology: a global approach, 11th edition (Global Edition), Harlow, Pearson Education Limited.
                    • Thain, M., and Hickman, M. (2014), The Penguin Dictionary of Biology, 11th edition. London: Penguin Publishing Group.
                    • Author unknown, National Geographic (date unknown), Speciation (online) [Accessed 28/02/2021].
                    • Author unknown, Understanding Evolution (date unknown), Sympatric speciation (online). Available at: 'berkeley.edu' [Accessed 28/02/2021].
                    • 5 min
                    • Bonus- William Darwin's Development

                      Bonus episode! Today, I'm going to focus on a less well-known story from the Darwin family. Specifically, let's look at William Erasmus Darwin, the eldest child of the family. In 1877, Darwin published an article about his observations of William's development.


                      Sources for this episode:

                      • Darwin, C. R. (1877), A biographical sketch of an infant. Scientific American Supplement 86: 1373- 1374 (online). Available at: Internet Archive [Accessed 25/03/2021].
                      • Author unknown, Wikipedia (date unknown), William Erasmus Darwin (online) [Accessed 25/03/2021].
                      • Author unknown, Wikipedia (date unknown), The Descent of Man (online) [Accessed 26/03/2021].
                      • 5 min

                      About Biopedia

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                      Biology is a fascinating subject which is well worth exploring. Its scope stretches from individual DNA strands and viruses to blue whales, metapopulations and the biosphere. We will shine the…

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