the bioinformatics lab

Ep 7 Technological Advancements in public health bioinformatics


Listen Later

Hosted by Kevin Libuit and Andrew Page, the podcast focuses on the evolution of tech adoption in pathogen genomics. The narrative begins with the shift from traditional software packages to modern cloud-based GUIs. Early software installations were cumbersome, often taking weeks and requiring an in-depth understanding of dependencies and compilers. There was also a notable shift in programming languages from Ruby and Perl to Python. Package managers evolved from systems like Debian and Homebrew to Conda and BioConda, with Mamba offering further installation improvements. The podcast touched on the use of Make as an early workflow manager and its evolution to tools like snake make, next flow, and Galaxy. The role of GUIs in democratizing access to bioinformatics tools and the transition from on-prem servers to cloud computing was also discussed. However, there were concerns about the security implications of cloud computing in certain countries. The episode also delved into the challenges of closed-source tools and emphasized the benefits of open-source alternatives, especially those funded by public money. Finally, the potential influence of AI and machine learning on genomics was explored, acknowledging initial resistance but recognizing the inevitable integration of these technologies in the future. The podcast highlighted the tech journey in pathogen genomics, the significance of open-source tools, and the exciting prospects brought about by AI and machine learning.
...more
View all episodesView all episodes
Download on the App Store

the bioinformatics labBy The Bioinformatics Lab


More shows like the bioinformatics lab

View all
The Joe Rogan Experience by Joe Rogan

The Joe Rogan Experience

228,818 Listeners

StarTalk Radio by Neil deGrasse Tyson

StarTalk Radio

14,291 Listeners

Explain It to Me by Vox

Explain It to Me

7,850 Listeners

Pivot by New York Magazine

Pivot

9,485 Listeners

Nature Podcast by Springer Nature Limited

Nature Podcast

763 Listeners

Science Talk by Scientific American

Science Talk

600 Listeners

Science Magazine Podcast by Science Magazine

Science Magazine Podcast

826 Listeners

Science Friday by Science Friday and WNYC Studios

Science Friday

6,334 Listeners

Up First from NPR by NPR

Up First from NPR

56,436 Listeners

The Long Run with Luke Timmerman by Timmerman Report

The Long Run with Luke Timmerman

124 Listeners

Today, Explained by Vox

Today, Explained

10,227 Listeners

Biotech 2050 Podcast by Biotech 2050

Biotech 2050 Podcast

61 Listeners

Unexplainable by Vox

Unexplainable

2,297 Listeners