Acanthocytes, abnormal thorny red blood cells (RBC), are one of the biological hallmarks of neuroacanthocytosis syndromes
(NA), a group of rare hereditary neurodegenerative disorders. Since RBCs are easily accessible, the study of acanthocytes in
NA may provide insights into potential mechanisms of neurodegeneration. Previous studies have shown that changes in
RBC membrane protein phosphorylation state affect RBC membrane mechanical stability and morphology. Here, we
coupled tyrosine-phosphoproteomic analysis to topological network analysis. We aimed to predict signaling sub-networks
possibly involved in the generation of acanthocytes in patients affected by the two core NA disorders, namely McLeod
syndrome (MLS, XK-related, Xk protein) and chorea-acanthocytosis (ChAc, VPS13A-related, chorein protein). The
experimentally determined phosphoproteomic data-sets allowed us to relate the subsequent network analysis to the
pathogenetic background. To reduce the network complexity, we combined several algorithms of topological network
analysis including cluster determination by shortest path analysis, protein categorization based on centrality indexes, along
with annotation-based node filtering. We first identified XK- and VPS13A-related protein-protein interaction networks by
identifying all the interactomic shortest paths linking Xk and chorein to the corresponding set of proteins whose tyrosine
phosphorylation was altered in patients. These networks include the most likely paths of functional influence of Xk and
chorein on phosphorylated proteins. We further refined the analysis by extracting restricted sets of highly interacting
signaling proteins representing a common molecular background bridging the generation of acanthocytes in MLS and
ChAc. The final analysis pointed to a novel, very restricted, signaling module of 14 highly interconnected kinases, whose
alteration is possibly involved in generation of acanthocytes in MLS and ChAc