R Weekly Highlights

R Weekly Highlights

By Eric NantzScience
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R Weekly Highlights episodes

  • Issue 2024-W18 Highlights
    Why R 4.4.0 may reduce your trips to a certain kind of stack overflow, a call to update your favorite Shiny application code snippets, and how the steller ASTHOS Profile Shiny dashboard has your hosts blown away and fighting the urge to refactor their applications UIs!
    Episode Links
    • This week's curator: Eric Nantz: @[email protected] (Mastodon) and @theRcast (X/Twitter)
    • What's new in R 4.4.0?
    • It's time to add bslib to your shinyapp snippet
    • Tailoring Shiny for Modern Users
    • Entire issue available at rweekly.org/2024-W18
    Supplement Resources
    • Full R 4.4.0 changelog https://cran.r-project.org/doc/manuals/r-release/NEWS.html
    • R-bitrary Code Execution: Vulnerability in R’s Deserialization https://hiddenlayer.com/research/r-bitrary-code-execution/
    • ASTHO Profile dashboard https://astho.shinyapps.io/profile/
    • {plotcli} command-line plots for R https://github.com/cheuerde/plotcli 
    • Fritz Leisch (1968-2024) https://www.r-project.org/doc/obit/fritz.html
    Supporting the show
    • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
    • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
    • A new way to think about value: https://value4value.info 
    • Get in touch with us on social media
       
    •  
    Music credits powered by OCRemix
    • Trippin' on the Bridge - Streets of Rage - lazygecko - http://ocremix.org/remix/OCR00993
    • You Are Not Confined - Final Fantasy IX - Sonicade - https://ocremix.org/remix/OCR01064
    37 min
  • Issue 2024-W17 Highlights
    Bringing interactivity to a staple graphical display in the genomics space, how one team is taking the box approach to sharing and developing modular R code, and a set of intriguing benchmarks with the newly-releaed duckplyr that have your hosts thinking of many possibilities.
    Episode Links
    • This week's curator: Jon Carroll - @[email protected] (Mastodon) & @carroll_jono (X/Twitter)
    • Interactive volcano plots with the ggiraph R package
    • Modular R code for analytical projects with {box}
    • Kicking tyres
    • Entire issue available at rweekly.org/2024-W17
    Supplement Resources
    • How to interpret a volcano plot https://biostatsquid.com/volcano-plot/
    • Source code behind Tim's {duckplyr} and {data.table} benchmarks https://git.sr.ht/~tim-taylor/duckplyr-benchmarks
    • Attach to a DuckDB Database over HTTPS or S3 https://duckdb.org/docs/guides/networkcloudstorage/duckdboverhttpsors3
    Supporting the show
    • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
    • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
    • A new way to think about value: https://value4value.info 
    • Get in touch with us on social media
       
    •  
    Music credits powered by OCRemix
    • Snow Cone Heaven - Ice Climber - Mazedude - https://ocremix.org/remix/OCR01176
    • Cleaning Out Axis - Batman (NES) - Midee - https://ocremix.org/remix/OCR03008
    39 min
  • Issue 2024-W16 Highlights
    Another way to hop on LLM train with the chattr package, a clever use of defensive programming to get to those warnings in your tests faster, and a major milestone for the R-Hub project.
    Episode Links
    • This week's curator: Tony Elhabr - @[email protected] (Mastodon) & @TonyElHabr (X/Twitter)
    • Chat with AI in RStudio
    • Test warnings faster
    • R-hub v2
    • Entire issue available at rweekly.org/2024-W16
    Supplement Resources
    • R/Pharma 2023 presentation by Edgar Ruiz (GitHub Copilot in RStudio) - https://youtu.be/-Fjb8LZmTSI
    • The 2024 Appsilon Shiny Conference is just days away! https://www.shinyconf.com/
    Supporting the show
    • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
    • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
    • A new way to think about value: https://value4value.info 
    • Get in touch with us on social media
       
    Music credits powered by OCRemix
    • Memories of a Master - Street Fighter II: The World Warrior - Captain Hogan - https://ocremix.org/remix/OCR02268
    • Higgins Goes to Miami - Adventure Island - virt - https://ocremix.org/remix/OCR00461
    37 min
  • Issue 2024-W15 Highlights
    The Nix and R train rolls on with automated caching, a collection of big improvements landing in webR, and how hand-crafted visualizations bring fundamental dplyr grouping operations to life.
    Episode Links
    • This week’s curator: Jon Calder (@jonmcalder) (X/Twitter)
    • Reproducible data science with Nix, part 11 – build and cache binaries with Github Actions and Cachix
    • webR 0.3.1
    • Visualizing {dplyr}’s mutate(), summarize(), group_by(), and ungroup() with animations: Visually explore how {dplyr}’s more complex core functions work together to wrangle data
    • Entire issue available at rweekly.org/2024-W15
    Supplement Resources
    • Bruno’s unit test involving {tidyselect} https://raw.githack.com/b-rodrigues/nixpkgs-r-updates-fails/targets-runs/output/r-updates-fails.html
    • Cachix https://www.cachix.org/
    • R/Medicine Call for Abstracts Open https://www.r-consortium.org/events/2024/04/05/r-medicine-coming-june-10-14-2024
    • Survival analysis for time-to-event data with tidymodels https://www.tidyverse.org/blog/2024/04/tidymodels-survival-analysis/
    Supporting the show
    • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
    • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
    • A new way to think about value: https://value4value.info
    • Get in touch with us on social media 
    Music credits powered by OCRemix
    • Sun Ra - Ragnarok Online - Anthony Lofton, Joshua Morse - https://ocremix.org/remix/OCR01811
    • Chopinesque Kirby - Kirby’s Dream Land - Bladiator - https://ocremix.org/remix/OCR01257
    52 min
  • Issue 2024-W14 Highlights
    Taking the tradition of spring cleaning your R session to a nefarious direction, how a little R and automation crafted together helps with bill payments, and the tried-and-true method of simulation in action to investigate time-to-event inference statistics.
    Episode Links
    • This week’s curator: Ryo Nakagawara - @R_by_Ryo) (X/Twitter) & @[email protected] (Mastodon)
    • I Made R Text For Me
    • Stop Jenny committing arson
    • The log-rank Test Assumes More Than the Cox Model
    • Entire issue available at rweekly.org/2024-W14
    Supplement Resources
    • Linux Unplugged episode 156: The xz Backdoor Exposed https://www.jupiterbroadcasting.com/show/linux-unplugged/556/
    • Pushbullet https://www.pushbullet.com/
    • {rpushbullet} R interface to the awesome Pushbullet service https://github.com/eddelbuettel/rpushbullet
    • Mike’s PDF quarto reports in devcontainers GitHub repo https://github.com/ketchbrookanalytics/quarto-pdf-dev
    • Aligning Beliefs and Profession: Using R in Protecting the Penobscot Nation’s Traditional Lifeways https://www.r-consortium.org/blog/2024/03/27/aligning-beliefs-and-profession-using-r-in-protecting-the-penobscot-nations-traditional-lifeways
    • Using Data to Protect Traditional Lifeways https://www.youtube.com/watch?v=2PjOSBHRm74
    Supporting the show
    • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
    • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
    • A new way to think about value: https://value4value.info
    • Get in touch with us on social media 
    Music credits powered by OCRemix
    • Heart’s Lullaby - Final Fantasy V - RebeccaETripp, Gamer of the Winds, Rahul Vanamali, Teil Buck - https://ocremix.org/remix/OCR04572
    • Tails and the Music Maker - Picolescence - zircon - https://ocremix.org/remix/OCR02176
    42 min
  • Issue 2024-W13 Highlights

    How a recent pivot in one of the most popular testing frameworks in R unlocks mocking once again, bringing robust grammar checks to your R development environment with rspell, and flex your Shiny and HTML design muscles with flexbox.

    Episode Links

    • This week's curator: Batool Almarzouq - @batool664 (X/Twitter)
    • Update on mocking for testing R packages
    • {rspell} Are you writing in a foreign language? The RStudio spelling dictionary setting is not sufficient to correct grammar errors. Try the {rspell} package to grammar-proof your notebooks and documentation straight on RStudio without copying-pasting.
    • 3MW (Aligning content with flexboxes)
    • Entire issue available at rweekly.org/2024-W13
    • Supplement Resources

      • testthat 3.2.0 re-introduced mocking after it was removed in 2019. The PR with Hadley's commentary https://github.com/r-lib/testthat/pull/1739#issuecomment-1428027869
      • Supporting the show

        • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
        • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
        • A new way to think about value: https://value4value.info
        • Get in touch with us on social media
          • Eric Nantz: @[email protected] (Mastodon) and @theRcast (X/Twitter)
          • Mike Thomas: @[email protected] (Mastodon) and @mike_ketchbrook (X/Twitter)
          • Music credits powered by OCRemix

            • Kannonball - Donkey Kong Country 2: Diddy Kong's Quest - The Good Ice - https://ocremix.org/remix/OCR04571
            • The Art of Zoning Out - Pokemon Scarlet - timaeus222 - https://ocremix.org/remix/OCR04570
            • 39 min
            • Issue 2024-W12 Highlights

              An honest take on common patterns and anti-patterns for re-use of data analyses that hit a bit too close to home for your hosts, a cautionary tale of garbage online references pretending to be authentic material, and a new (human-created) cheat sheet with terrific best practices taking front and center.

              Episode Links

              • This week's curator: Sam Parmar - @parmsam_ (Twitter) & @[email protected] (Mastodon)
              • Patterns and anti-patterns of data analysis reuse
              • $%@! R help from $%@! AI
              • Best Practice for R :: Cheat Sheet
              • Entire issue available at rweekly.org/2024-W12
              • Additional Links

                • Jon Harmon's request for additional R4DS funding: https://fosstodon.org/@R4DSCommunity/112099679313058951
                • Linux Unplugged Episode 554: SCaLEing Nix https://www.jupiterbroadcasting.com/show/linux-unplugged/554/
                • Supporting the show

                  • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
                  • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
                  • A new way to think about value: https://value4value.info
                  • Get in touch with us on social media
                    • Eric Nantz: @theRcast (Twitter) and @[email protected] (Mastodon)
                    • Mike Thomas: @mike_ketchbrook (Twitter) and @[email protected] (Mastodon)
                    • Music credits powered by OCRemix

                      • A Crook Man's Eyes - Mega Man 5 - Nightswim - http://ocremix.org/remix/OCR03679
                      • Plastik Skies - VROOM: Sega Racing - Palpable, Diodes - https://ocremix.org/remix/OCR03726
                      • 47 min
                      • Issue 2024-W11 Highlights

                        A collection of tips for spreading the good word about your awesome R package, how spring cleaning a package codebase doesn't have to be a dreadful experience thanks to usethis, and the culmination of a learning journey to bootstrap node JS projects powered by webR.

                        Episode Links

                        • This week's curator: Colin Fay - [@_ColinFay]](https://twitter.com/_ColinFay) (Twitter)
                        • Marketing Ideas For Your Package
                        • Spring clean your R packages
                        • webrcli & spidyr: A starter pack for building NodeJS projects with webR inside
                        • Entire issue available at rweekly.org/2024-W11
                        • Supplement Resources

                          • rOpenSci software review process: Aims and scope https://devguide.ropensci.org/softwarereview_policies.html#aims-and-scope
                          • Colin Fay's hexmake Shiny app https://github.com/ColinFay/hexmake
                          • No installation required: How WebAssembly is changing scientific computing https://www.nature.com/articles/d41586-024-00725-1
                          • tryr - Client/Server Error Handling for HTTP APIs https://github.com/analythium/tryr
                          • Supporting the show

                            • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
                            • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
                            • A new way to think about value: https://value4value.info
                            • Get in touch with us on social media
                              • Eric Nantz: @theRcast (Twitter) and @[email protected] (Mastodon)
                              • Mike Thomas: @mike_ketchbrook (Twitter) and @[email protected] (Mastodon)
                              • Music credits powered by OCRemix

                                • Vivid Orbis - Marble Madness - Gaspode - https://ocremix.org/remix/OCR04555
                                • Black Genesis (Floating Continent) - Final Fantasy VI Balance & Ruin - Brandon Stradery, Rexy - https://ocremix.org/remix/OCR02796
                                • 49 min
                                • Issue 2024-W10 Highlights

                                  How an attempt to solve a clever programming exercise led to a new patch to the R language itself, a review of the enlightening results for the recent data.table community survey, and creating a Doom map in R, because why not?

                                  Episode Links

                                  • This week's curator: Eric Nantz - @theRcast (Twitter) & @[email protected] (Mastodon)
                                  • I Patched R to Solve an Exercism Problem
                                  • {data.table} Community Survey: Results and insights
                                  • Doom plots
                                  • Entire issue available at rweekly.org/2024-W10
                                  • Supplement Resources

                                    • https://exercism.org/
                                    • Supporting the show

                                      • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
                                      • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
                                      • A new way to think about value: https://value4value.info
                                      • Get in touch with us on social media
                                        • Eric Nantz: @theRcast (Twitter) and @[email protected] (Mastodon)
                                        • Mike Thomas: @mike_ketchbrook (Twitter) and @[email protected] (Mastodon)
                                        • Music credits powered by OCRemix

                                          • Bonus Bop - Donkey Kong Country 2: Serious Monkey Business - Xenon Odyssey, The UArts "Z" Big Band - https://dkc2.ocremix.org/
                                          • Hangarmageddon - Doom Dark Side of the Phobos - EvilHorde - https://ocremix.org/album/4/doom-the-dark-side-of-phobos
                                          • 47 min
                                          • Issue 2024-W09 Highlights

                                            Flipping a Hello World function on its head, assorted improvements landing in ggplot2 3.5.0, and why authoring beautiful code is so worth it.

                                            Episode Links

                                            • This week's curator: Jon Carroll - @carroll_jono (Twitter) & @[email protected] (Mastodon)
                                            • HelloWorld(“print”)
                                            • ggplot2 3.5.0
                                            • Beautiful Code, Because We’re Worth It!
                                            • Entire issue available at rweekly.org/2024-W09
                                            • Supplement Resources

                                              • lazygit - Simple terminal UI for git commands https://github.com/jesseduffield/lazygit
                                              • Advanced R - Expressions https://adv-r.hadley.nz/expressions.html
                                              • Jenny Bryan's talk on code smells and feels https://github.com/jennybc/code-smells-and-feels
                                              • Supporting the show

                                                • Use the contact page at https://rweekly.fireside.fm/contact to send us your feedback
                                                • R-Weekly Highlights on the Podcastindex.org - You can send a boost into the show directly in the Podcast Index. First, top-up with Alby, and then head over to the R-Weekly Highlights podcast entry on the index.
                                                • A new way to think about value: https://value4value.info
                                                • Get in touch with us on social media
                                                  • Eric Nantz: @theRcast (Twitter) and @[email protected] (Mastodon)
                                                  • Mike Thomas: @mike_ketchbrook (Twitter) and @[email protected] (Mastodon)
                                                  • Music credits powered by OCRemix

                                                    • Everybody Wants to Rule the Wisps - Sonic Colors - The Good Ice - https://ocremix.org/remix/OCR04368
                                                    • You Are Not Confined - Final Fantasy IX - Sonicade - https://ocremix.org/remix/OCR01064
                                                    • 47 min

                                                    About R Weekly Highlights

                                                    From the publisher's feed

                                                    The R Weekly podcast offers a quick description of the latest highlighted stories and other stories from the latest R Weekly issue, as curated by the R Weekly team and R community.

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