Rafael Camacho Podcast

Robert Haase - Bioimage analysis, smart microscopy, GPU acceleration and open-software development


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Robert Haase is a group leader and bio-image analyst at the DFG Cluster of Excellence "Physics of Life" TU Dresden. In this conversation Robert and I go over many interesting topics, covering the typical suspects (image analysis, software development, GPU acceleration) as well as some other technical and not so technical topics. 

Relevant links to some of the topics in the episode:

Robert's group: https://physics-of-life.tu-dresden.de/en/research/technology-development-groups/bio-image-analysis 

Robert's Twitter account: https://twitter.com/haesleinhuepf

Robert's GitHub account: https://github.com/haesleinhuepf

Robert's YouTube channel: https://www.youtube.com/channel/UC-hlwQ9Q4GS3rtv2EwSStAQ

CLIJ: https://clij.github.io/

clEsperanto: https://clesperanto.github.io/

Imagesc Forum: https://forum.image.sc/

NEUBIAS: https://eubias.org/NEUBIAS/

NEUBIAS youtube channel: https://www.youtube.com/channel/UC-oy7UpEhRfHQ-5ePCviKFg

Rubber duck debugging: https://en.wikipedia.org/wiki/Rubber_duck_debugging

Napari: https://napari.org/

ImageJ: https://imagej.nih.gov/ij/index.html

Biaflows: https://biaflows.neubias.org/#/

List of topics covered (in order or appearance, sort of):

Beers - Holsten dreht am dollsten.

Robert's new role as principal investigator/group leader

Robert's history as a software engineer

Bio-image analysis

Beatles and smart microscopy

Light-sheet microscopy

GPU acceleration

Big-data

Bugs and software development

Fear of programming

Teaching and remote teaching

NEUBIAS

Naming conventions in bio-image analysis

Rubber duck debugging

clEsperanto

Building bridges between developers, analysts, and biologists 

ImageJ / FIJI

Napari

Developers and users interaction

Sustainable software development

Biaflows

Robert's retirement plan

Open-source

Docker technology

Weather in the north

Remote collaboration


...more
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Rafael Camacho PodcastBy Rafael Camacho