The following video provides instruction for connecting to MSI Linux machines using terminal clients.

The following video provides instruction for connecting to MSI Linux machines using NoMachine NX client.

The following video provides an overview of all the labs at MSI.

MSI is primarily a Linux based HPC center. The following video provides an overview of all the Linux systems at MSI.

This video is an introduction to MSI resources brought to you by MSI staff.

ProteinPilot™ is a proteomics software program used for analysis of peptide tandem mass spectrometry data and for relative quantification of proteins using the iTRAQ® technology and other modes of stable isotope labeling. Raw data acquired on AB Sciex instruments such as MALDI-TOF/TOF 4800 or QSTAR systems is searched against protein sequence databases; the Paragon scoring algorithm provides confidence levels for protein hits, and the ProGroup algorithm tool (PMID: 17533153) groups related and homologous proteins. The highlights of the software include: a user-friendly interface, simultaneous prediction of hundreds of peptide modifications (~175) and non-tryptic cleavages, the ability to perform quantification at the protein iso-form level, and a sophisticated FDR (false discovery rate) analysis that includes protein- and peptide-level reports. The newest version of ProteinPilot™ also supports identification of peptides and proteins from data acquired on non-AB Sciex instruments after conversion of raw data into *.mgf file format. The tutorial will include an introduction to the software followed by iTRAQ® Data analysis workflow and FDR analysis overviews.

ProteinPilot™ is a proteomics software program used for analysis of peptide tandem mass spectrometry data and for relative quantification of proteins using the iTRAQ® technology and other modes of stable isotope labeling. Raw data acquired on AB Sciex instruments such as MALDI-TOF/TOF 4800 or QSTAR systems is searched against protein sequence databases; the Paragon scoring algorithm provides confidence levels for protein hits, and the ProGroup algorithm tool (PMID: 17533153) groups related and homologous proteins. The highlights of the software include: a user-friendly interface, simultaneous prediction of hundreds of peptide modifications (~175) and non-tryptic cleavages, the ability to perform quantification at the protein iso-form level, and a sophisticated FDR (false discovery rate) analysis that includes protein- and peptide-level reports. The newest version of ProteinPilot™ also supports identification of peptides and proteins from data acquired on non-AB Sciex instruments after conversion of raw data into *.mgf file format. The tutorial will include an introduction to the software followed by iTRAQ® Data analysis workflow and FDR analysis overviews.

ProteinPilot™ is a proteomics software program used for analysis of peptide tandem mass spectrometry data and for relative quantification of proteins using the iTRAQ® technology and other modes of stable isotope labeling. Raw data acquired on AB Sciex instruments such as MALDI-TOF/TOF 4800 or QSTAR systems is searched against protein sequence databases; the Paragon scoring algorithm provides confidence levels for protein hits, and the ProGroup algorithm tool (PMID: 17533153) groups related and homologous proteins. The highlights of the software include: a user-friendly interface, simultaneous prediction of hundreds of peptide modifications (~175) and non-tryptic cleavages, the ability to perform quantification at the protein iso-form level, and a sophisticated FDR (false discovery rate) analysis that includes protein- and peptide-level reports. The newest version of ProteinPilot™ also supports identification of peptides and proteins from data acquired on non-AB Sciex instruments after conversion of raw data into *.mgf file format. The tutorial will include an introduction to the software followed by iTRAQ® Data analysis workflow and FDR analysis overviews.

ProteinPilot™ is a proteomics software program used for analysis of peptide tandem mass spectrometry data and for relative quantification of proteins using the iTRAQ® technology and other modes of stable isotope labeling. Raw data acquired on AB Sciex instruments such as MALDI-TOF/TOF 4800 or QSTAR systems is searched against protein sequence databases; the Paragon scoring algorithm provides confidence levels for protein hits, and the ProGroup algorithm tool (PMID: 17533153) groups related and homologous proteins. The highlights of the software include: a user-friendly interface, simultaneous prediction of hundreds of peptide modifications (~175) and non-tryptic cleavages, the ability to perform quantification at the protein iso-form level, and a sophisticated FDR (false discovery rate) analysis that includes protein- and peptide-level reports. The newest version of ProteinPilot™ also supports identification of peptides and proteins from data acquired on non-AB Sciex instruments after conversion of raw data into *.mgf file format. The tutorial will include an introduction to the software followed by iTRAQ® Data analysis workflow and FDR analysis overviews.

ProteinPilot™ is a proteomics software program used for analysis of peptide tandem mass spectrometry data and for relative quantification of proteins using the iTRAQ® technology and other modes of stable isotope labeling. Raw data acquired on AB Sciex instruments such as MALDI-TOF/TOF 4800 or QSTAR systems is searched against protein sequence databases; the Paragon scoring algorithm provides confidence levels for protein hits, and the ProGroup algorithm tool (PMID: 17533153) groups related and homologous proteins. The highlights of the software include: a user-friendly interface, simultaneous prediction of hundreds of peptide modifications (~175) and non-tryptic cleavages, the ability to perform quantification at the protein iso-form level, and a sophisticated FDR (false discovery rate) analysis that includes protein- and peptide-level reports. The newest version of ProteinPilot™ also supports identification of peptides and proteins from data acquired on non-AB Sciex instruments after conversion of raw data into *.mgf file format. The tutorial will include an introduction to the software followed by iTRAQ® Data analysis workflow and FDR analysis overviews.