In this episode, I talk with Gabriel Baldanzi, PhD, M.D., and Koen Dekkers, Research Assistant, who work in the same research group at Uppsala University. They are both actively researching the role of the gut microbiome in human health and chronic disease.
Studies discussed in this episode:
- Dekkers, K.F., Sayols-Baixeras, S., Baldanzi, G. et al. An online atlas of human plasma metabolite signatures of gut microbiome composition. Nature Communications 13, 5370 (2022).
- Baldanzi, Gabriel et al. Accelerometer-based physical activity is associated with the gut microbiota in 8416 individuals in SCAPIS. eBioMedicine, Volume 100, 104989.
- Baldanzi, Gabriel et al., OSA Is Associated With the Human Gut Microbiota Composition and Functional Potential in the Population-Based Swedish CardioPulmonary bioImage Study. CHEST, Volume 164, Issue 2, 503 - 516.
Gutsy atlas link.
Episode chapters:
00:00 Introduction to the episode and guest researchers, discussing the role of the gut microbiome in chronic diseases.
06:00 Overview of how bacteria in the gut impact health, immune response, and metabolism.
09:24 Methods used in the study, focusing on shotgun metagenomics and its advantages.
10:01 The relationship between gut microbiota-derived metabolites like TMAO and cardiovascular risk.
12:11 Explanation of metagenomics methods used in the study to measure gut microbiome.
18:09 Overview of the study’s large sample size and its unique approach.
20:44 Health Implications of Butyrate
21:37 Fiber’s Role in Butyrate Production
23:32 Diet and Gut Microbiome Diversity
27:18 Fiber Intake and Gut Health
30:19 Alpha Diversity in the Gut Microbiome
37:05 Microbiome Diversity and Type 2 Diabetes
44:00 Future of Microbiome Sampling Techniques: Capsule Innovations
45:04 Exploring Rare and Uncatalogued Species
47:02 The Role of AI in Gut Microbiome Research
50:00 Selecting Metabolites for Research Focus & Gutsy Atlas
01:00:11 Coffee Metabolites and Their Variance
01:00:40 Interpreting Associations between Coffee Metabolites and Gut Microbiota Variety and Specific Species
01:06:27 Streptococcus salivarius and Coffee Metabolites
01:10:31 Plasma Nucleotides and Gut Microbiome
01:12:12 Physical Activity and Gut Microbiome Diversity
01:14:55 Dietary Fiber and Gut Microbiome Diversity
01:15:53 Physical Activity and Its Impact on Gut Health
01:16:46 Physical Activity, Adiposity, and Microbiome Diversity
01:19:25:12 Genetic Predisposition and Physical Activity Effects
01:22:14 Gut Microbiota and Exercise Enjoyment
01:22:55 Gut-Brain Axis and Exercise
01:23:43 Lactate-consuming Bacteria in Marathon Runners
01:25:23 Gut Microbiota and Physical Activity Habits
01:25:51 Sedentary Behavior and GABA-producing E. coli Abundance
01:27:36 Gut Microbiota’s Effect on Behavior
01:28:40 Vagus Nerve and Gut Microbiota Influence
01:30:07 Fecal Transplants and Mood Enhancement
01:32:47 Colonization Resistance and Probiotics, The Long-Term Effects of Supplementing Gut Bacteria
01:37:28 Factors Influencing Probiotic Retention
01:38:47 Risks of Probiotics Competing with Native Species
01:43:36 What Diet is Best for Promoting a Healthy Gut Microbiome
01:45:30 Obstructive Sleep Apnea and the Gut Microbiome
01:47:58 Hypoxia and its Impact on the Gut Microbiome, Including by Altering Lactate and Propionate Metabolism
02:00:07 Cognitive Performance and the Gut Microbiome
02:00:31 Upcoming Large Microbiome Studies
02:01:08 Preliminary Findings in Microbiome and Cognition
02:06:45 Current Microbiome Tests for Consumers on the Commercial Market
02:10:50 Antibiotic Use and Its Long-Term Effects on the Microbiome
02:13:22 Conclusion and Thanks