Machine-Centric Science

Materials Project (MP) website: https://materialsproject.org/

Novel Materials Discovery (NOMAD) Laboratory: https://nomad-lab.eu/

Contributor Roles Taxonomy: https://credit.niso.org/

Authentication resources (FAIR A1.2):
- https://portier.github.io/using.html
- https://github.com/simov/grant
- https://docs.konghq.com/

U.S. Department of Energy resources:
- Office of Scientific and Technical Information (OSTI) Data ID Service: https://www.osti.gov/data-services
- https://www.energy.gov/science/office-science-pure-data-resources

Connecting with Patrick:
- https://www.linkedin.com/in/tschaume/
- https://twitter.com/tschaume
- https://appliedenergyscience.lbl.gov/people/patrick-huck

The FAIR Implementation Profile (FIP) Ontology: https://w3id.org/fair/fip/terms/FIP-Ontology

Linked Open Vocabularies (LOV): https://lov.linkeddata.es/dataset/lov/

FAIRSharing: https://fairsharing.org/

PageRank of Linked Open Vocabularies (LOV): https://donnywinston.com/posts/pagerank-of-linked-open-vocabularies-lov/

Principles of Open Scholarly Infrastructure (POSI): https://openscholarlyinfrastructure.org/

https://www.w3.org/TR/prov-dm/#dfn-provenance

# Component 1: Entities/Activities:
Type: Entity
Type: Activity
Relation: Generation/Invalidation (E-Act)
Relation: Usage (Act-E)
Relation: Communication (Act1-[E]-Act2)

Relation: Trigger/Starter of Start of Act (trigger E, starter Act)
Relation: Trigger/Ender of End of Act End of Act (trigger E, ender Act)

# Component 2: Derivations:
Relation: Derivation (E-E, E-Act)

Relation: Revision (E-E)
Relation: Quotation (E-E)
Relation: Primary Source (E-E)

# Component3 : Agents, Responsibility, and Influence
Type: Agent
Relation: Attribution (E-Agt)
Relation: Association (Act-Agt (role), Act-E (plan))
Relation: Delegation (Agt-Act) - acted on behalf of

Relation: Influencer/Influencee ({E,Act,Agt}-[usage,start,end,generation,invalidation,communication,derviation,attribution,association,delgation]-{E,Act,Agt})

3 core types: entities, activities, agents. “instantaneous events” are put in context of activities.
wrt "time instants":
- generation is at instant of completion of production
- usage is at instant of beginning of utilization
- start, when activity is deemed started, is an instant
- end, when activity is deemed ended, is an instant
- invalidation is at instant of start of destruction, cessation, or expiry

10 influencing relations (not including 3 included subtypes of derivation - (1) [was] revision [of], (2) quotation ("was quoted from"), (3) [had] primary source).

The Creative Commons suite of licenses: CC0, CC BY, CC BY-SA, CC-BY-ND, CC BY-NC, CC BY-NC-SA, CC BY-NC-ND.

Code licenses: Server Side Public License, Affero GPL (AGPL), Lesser GPL (LGPL), Mozilla Public License (MPL), Business Source License (used e.g. by Sentry, ), Elastic License (for Elasticsearch), Apache 2.0, BSD, MIT. Spectrum of user freedom and redistributor freedom.

"The CRAPL: An academic-strength open source license":

* https://queryunderstanding.com
* http://contentunderstanding.com
* https://www.w3.org/TR/json-ld11-framing/
* https://www.w3.org/TR/shacl/
* https://jasonformat.com/islands-architecture/
* https://www.hydra-cg.com/spec/latest/core/

In the W3C Provenance Ontology:
https://www.w3.org/TR/prov-o/#wasDerivedFrom

The HTML Anchor Element:
https://developer.mozilla.org/en-US/docs/Web/HTML/Element/a

Heather Hedden, "Foundation for a Knowledge Graph Taxonomy Design Best Practices", slides at https://zenodo.org/record/6510205

Teodora Petkova, "The Dialogic Potential of the Web of Data", slides at https://zenodo.org/record/6518557

https://en.wikipedia.org/wiki/Bohm_Dialogue

Tim Berners-Lee's bag of chips

https://www.w3.org/TR/vocab-dcat-2/#Class:Dataset

https://schema.org/Dataset

GUPRIs, RDF, RDFS, OWL, SHACL, JSON, JSON-LD, JSON Schema, ActivityPub, "fediverse", XMPP, SMTP.

Archival Resource Key (ARK) specification (section on policy metadata): https://datatracker.ietf.org/doc/html/draft-kunze-ark-34#section-5.1.1.

Permanence Levels and the Archives for NIH NLM's Permanent Web Documents: https://www.nlm.nih.gov/pubs/techbull/ma05/ma05_archive.html.