tv.qiagenbioinformatics.com

This is the recording for the 90-minute LIVE group session designed to address different technical questions regarding IPA certification. This video goes over the answers for quiz#1 as well as some other questions asked by the IPA Certification 2025 course participants.

See how highly sensitive somatic detection of classic tumor reference samples is made possible through the Twist Oncology - DNA CGP Panel™ combined with downstream analysis using QIAGEN® CLC Genomics Workbench.

What is the Twist Oncology - DNA CGP Panel?

It is a panel from Twist Biosciences® that is designed for the comprehensive genomic profiling (CGP) of solid tumors to find pathogenic variants. It also supports the scoring of microsatellite instability (MSI) and tumor mutational burden (TMB).

What is QIAGEN CLC Genomics Workbench?

A powerful all-in-one analysis and visualization toolkit, it is software filled with various tools and workflows tailored to next-generation sequencing (NGS) data, including data from a wide range of resequencing panel designs.

In this video we introduce sample batching using CLC tools. This can be helpful when you need to perform the same analysis on a large number of files. Also see this manual page  for more details:

https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Batch_processing.html

This video demonstrates how to analyze multiple input files per sample using batch mode. Please also see this FAQ page for more details:

How can I run a batch job with multiple libraries for each sample?   

The history view keeps track of what tools and parameters were used to generate results in CLC. This video shows how the history view can be used to compare two different analyses when the results are unexpected.

Details about the history view can be found on this manual page:

https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=History_Element_Info_views.html

This video provides a quick introduction to myCLC. If you do not already have access to myCLC Please contact [email protected]

Also, check out these FAQ pages:

What is myCLC?  

How can I get access to myCLC?  

How can I find information about my CLC licenses?   

How can I add someone as a technical contact to myCLC?  

How can I view information for another myCLC account?

In this video you can learn how to import tracks and create a track list in CLC. Track lists enable users to view multiple track elements at once. Track lists also feature an interactive link between the table view and the plot view.

Use track lists to browse genomic features, zoom into regions of interest, visualize read mappings, inspect variants, and more. Please also see this manual page for more details:

https://resources.qiagenbioinformatics.com/manuals/clcgenomicsworkbench/current/index.php?manual=Track_lists.html

This video shows how to customize volcano plots in CLC Genomics Workbench. Check out these tutorials for more RNA-seq related topics:

https://digitalinsights.qiagen.com/support/tutorials/#:~:text=Expression%20and%20fusions

More and more biopharma and academic groups are looking to process a large number of samples simultaneously or for a quicker turnaround time. This webinar will introduce a flexible and powerful setup for running your NGS sequence analyses through servers or Amazon Web Services (AWS). See how QIAGEN CLC Genomics Workbench can be used to customize workflows and send analyses for batch execution. We will also highlight analysis automation solutions, use of third-party dockers, audit trails and user management – all of which are available within the CLC Genomics Server software.

You will learn to:

• Customize template workflows to meet your NGS analysis requirements

• Set up a CLC Genomics Cloud environment on AWS

• Submit workflows to run on internal servers or AWS and retrieve results from these analyses

• Use third-party dockers and automate workflow execution