This article "The Microbiome Connection: A Common Pathway Linking Cancer and Heart Failure" is published in Biomedicines.

Author:⁠⁠ Ioannis Paraskevaidis

Journal: Biomedicines

Year: 2025

Podcast type: Short

The authors are:

⦁ Ioannis Paraskevaidis

⦁ Elias Tsougos

⦁ Christos Kourek

Affiliations:

Ioannis Paraskevaidis, Christos Kourek, Medical School of Athens, National and Kapodistrian University of Athens, Athens, Greece

Elias Tsougos, Department of Cardiology, Hygeia Hospital, Athens, Greece

This article "GraphComm predicts cell–cell communication using a graph-based deep learning method in single-cell RNA sequencing data" is published in Nature Communications.

Author: Emily So

Journal: Nature Communications

Year: 2025

Podcast type: Short

The authors are:

• Emily So
• Sikander Hayat
• Sisira Kadambat Nair
• Bo Wang
• Benjamin Haibe-Kains

Affiliations:

Emily So, Sisira Kadambat Nair, Benjamin Haibe-Kains, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada

Emily So, Benjamin Haibe-Kains, Department of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada

Sikander Hayat, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany

Bo Wang, Benjamin Haibe-Kains, Department of Computer Science, University of Toronto, Toronto, Ontario, Canada

Bo Wang, Vector Institute for Artificial Intelligence, Toronto, Ontario, Canada

Bo Wang, University Health Network, Toronto, Ontario, Canada

Benjamin Haibe-Kains, Ontario Institute for Cancer Research, Toronto, Ontario, Canada

This article "Deep learning speeds the search for new antibiotic scaffolds" is published in Nature Biotechnology.

Author:⁠⁠ Yumeng Zhang

Journal: Nature Biotechnology

Year: 2025

Podcast type: Short

The authors are:

⦁ Yumeng Zhang

⦁ Jiangning Song

⦁ Cesar de la Fuente-Nunez

Affiliations:

Yumeng Zhang, Jiangning Song, Biomedicine Discovery Institute and Department of Biochemistry and Molecular Biology, Monash University, Clayton, Victoria, Australia

Yumeng Zhang, Jiangning Song, Monash AI Institute, Monash University, Melbourne, Victoria, Australia

Cesar de la Fuente-Nunez, Machine Biology Group, Departments of Psychiatry and Microbiology, Institute for Biomedical Informatics, Institute for Translational Medicine and Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA

Cesar de la Fuente-Nunez, Departments of Bioengineering and Chemical and Biomolecular Engineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA, USA

Cesar de la Fuente-Nunez, Department of Chemistry, School of Arts and Sciences, University of Pennsylvania, Philadelphia, PA, USA

Cesar de la Fuente-Nunez, Penn Institute for Computational Science, University of Pennsylvania, Philadelphia, PA, USA

This article "Origins of chromosome instability unveiled by coupled imaging and genomics" is published in Nature.

Author:⁠⁠ Marco Raffaele Cosenza

Journal: Nature

Year: 2025

Podcast type: Short

The authors are:

⦁ Marco Raffaele Cosenza

⦁ Alice Gaiatto

⦁ Büşra Erarslan Uysal

⦁ Álvaro Andrades

⦁ Nina Luisa Sautter

⦁ Marina Simunovic

⦁ Michael Adrian Jendrusch

⦁ Sonia Zumalave

⦁ Tobias Rausch

⦁ Aliaksandr Halavatyi

⦁ Eva-Maria Geissen

⦁ Joshua Lucas Eigenmann

⦁ Thomas Weber

⦁ Patrick Hasenfeld

⦁ Eva Benito

⦁ Catherine Stober

⦁ Isidro Cortes-Ciriano

⦁ Andreas E. Kulozik

⦁ Rainer Pepperkok

⦁ Jan O. Korbel

Affiliations:

Marco Raffaele Cosenza, Alice Gaiatto, Álvaro Andrades, Nina Luisa Sautter, Marina Simunovic, Michael Adrian Jendrusch, Tobias Rausch, Joshua Lucas Eigenmann, Thomas Weber, Patrick Hasenfeld, Eva Benito, Catherine Stober, Jan O. Korbel, Genome Biology Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany

Büşra Erarslan Uysal, Andreas E. Kulozik, Department of Pediatric Oncology, Hematology and Immunology, Heidelberg University Hospital, Heidelberg, Germany

Büşra Erarslan Uysal, Andreas E. Kulozik, Hopp Children’s Cancer Center Heidelberg (KiTZ), Heidelberg, Germany

Büşra Erarslan Uysal, Andreas E. Kulozik, Division of Pediatric Oncology, German Cancer Research Center (DKFZ), Heidelberg, Germany

Büşra Erarslan Uysal, Andreas E. Kulozik, Department of Pediatric Oncology, German Cancer Consortium (DKTK), Heidelberg, Germany

Büşra Erarslan Uysal, Andreas E. Kulozik, Heidelberg University, Heidelberg, Germany

Sonia Zumalave, Isidro Cortes-Ciriano, Cancer, Ageing and Somatic Mutation Programme, Wellcome Sanger Institute, Hinxton, UK

Tobias Rausch, Division of Theoretical Bioinformatics, German Cancer Research Center (DKFZ), Heidelberg, Germany

Aliaksandr Halavatyi, Rainer Pepperkok, Cell Biology and Biophysics Unit, European Molecular Biology Laboratory (EMBL), Heidelberg, Germany

Eva-Maria Geissen, Thomas Weber, Department of Cell Biology, Biocenter, University of Würzburg, Würzburg, Germany

Rainer Pepperkok, CECAD Cluster of Excellence in Aging Research, University of Cologne, Cologne, Germany

Isidro Cortes-Ciriano, Jan O. Korbel, European Molecular Biology Laboratory–European Bioinformatics Institute (EMBL–EBI), Hinxton, UK

Jan O. Korbel, German Cancer Research Center (DKFZ), Heidelberg, Germany

This article "Regulation of RNA-binding proteins by small biomolecules" is published in Nature Reviews Molecular Cell Biology.

Author:⁠⁠ Weili Miao

Journal: Nature Reviews Molecular Cell Biology

Year: 2025

Podcast type: Short

The authors are:

⦁ Weili Miao

⦁ Douglas F. Porter

⦁ Vanessa Lopez-Pajares

⦁ Paul A. Khavari

Affiliations:

Weili Miao, Douglas F. Porter, Vanessa Lopez-Pajares, Paul A. Khavari, Program in Epithelial Biology, Stanford University School of Medicine, Stanford, CA, USA

Paul A. Khavari, Stanford Cancer Institute, Stanford, CA, USA

Paul A. Khavari, Veterans Affairs Palo Alto Healthcare System, Palo Alto, CA, USA

This article "Squidiff: predicting cellular development and responses to perturbations using a diffusion model" is published in Nature Methods.

Author: Siyu He

Journal: Nature Methods

Year: 2025

Podcast type: Short

The authors are:

• Siyu He
• Yuefei Zhu
• Daniel Naveed Tavakol
• Haotian Ye
• Yeh-Hsing Lao
• Zixian Zhu
• Cong Xu
• Shradha Chauhan
• Guy Garty
• Raju Tomer
• Gordana Vunjak-Novakovic
• James Zou
• Elham Azizi
• Kam W. Leong

Affiliations:

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol, Yeh-Hsing Lao, Zixian Zhu, Cong Xu, Raju Tomer, Gordana Vunjak-Novakovic, Elham Azizi, Kam W. Leong, Department of Biomedical Engineering, Columbia University, New York, NY, USA

Siyu He, Elham Azizi, Irving Institute for Cancer Dynamics, Columbia University, New York, NY, USA

Siyu He, James Zou, Department of Biomedical Data Science, Stanford University, Stanford, CA, USA

Haotian Ye, James Zou, Department of Computer Sciences, Stanford University, Stanford, CA, USA

Yeh-Hsing Lao, Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA

Shradha Chauhan, Raju Tomer, Department of Biological Sciences, Columbia University, New York, NY, USA

Guy Garty, Center for Radiological Research, Columbia University, New York, NY, USA

Gordana Vunjak-Novakovic, Elham Azizi, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, USA

James Zou, Department of Electrical Engineering, Stanford University, Stanford, CA, USA

Elham Azizi, Department of Computer Sciences, Columbia University, New York, NY, USA

Elham Azizi, Data Science Institute, Columbia University, New York, NY, USA

Kam W. Leong, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol, These authors contributed equally.

This article "Epigenetically driven and early immune evasion in colorectal cancer evolution" is published in Nature Genetics.

Author: Eszter Lakatos

Journal: Nature Genetics

Year: 2025

Podcast type: Short

The authors are:

• Eszter Lakatos
• Vinaya Gunasri
• Luis Zapata
• Jacob Househam
• Timon Heide
• Nicholas Trahearn
• Ottilie Swinyard
• Luis Cisneros
• Claire Lynn
• Maximilian Mossner
• Chris Kimberley
• Inmaculada Spiteri
• George D. Cresswell
• Gerard Llibre-Palomar
• Miriam Mitchison
• Carlo C. Maley
• Marnix Jansen
• Manuel Rodriguez-Justo
• John Bridgewater
• Ann-Marie Baker
• Andrea Sottoriva
• Trevor A. Graham

Affiliations:

Eszter Lakatos, Luis Zapata, Jacob Househam, Timon Heide, Nicholas Trahearn, Claire Lynn, Maximilian Mossner, Inmaculada Spiteri, George D. Cresswell, Ann-Marie Baker, Andrea Sottoriva, Trevor A. Graham, Evolutionary and Cancer Genomics Laboratory, The Institute of Cancer Research, London, UK

Vinaya Gunasri, Nicholas Trahearn, Marnix Jansen, Manuel Rodriguez-Justo, John Bridgewater, University College London, London, UK

Ottilie Swinyard, Chris Kimberley, Gerard Llibre-Palomar, Barts Cancer Institute, Queen Mary University of London, London, UK

Luis Cisneros, Carlo C. Maley, Arizona State University, Tempe, AZ, USA

Miriam Mitchison, University of Cambridge, Cambridge, UK

This article "RNA stability enhancers for durable base-modified mRNA therapeutics" is published in Nature Biotechnology.

Author: Soo-Jin Jung

Journal: Nature Biotechnology

Year: 2025

Podcast type: Short

The authors are:

• Soo-Jin Jung
• Jenny J. Seo
• Sunghan Lee
• Seong-In Hyun
• Ji-eun Lee
• Sojeong Lee
• Yeji Lee
• Hyeshik Chang
• Hyukjin Lee
• Jin-Hong Kim
• V. Narry Kim

Affiliations:

Soo-Jin Jung, Jenny J. Seo, Sunghan Lee, Seong-In Hyun, Ji-eun Lee, Sojeong Lee, Hyeshik Chang, Jin-Hong Kim, V. Narry Kim,

Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea; School of Biological Sciences, Seoul National University, Seoul, Republic of Korea

Yeji Lee, Hyukjin Lee, College of Pharmacy, Seoul National University, Seoul, Republic of Korea

Jenny J. Seo, Department of Microbiology, Harvard Medical School, Boston, MA, USA

This article "Insights into the relevance of targeting fibroblasts to control cancer" is published in Cell Reports Medicine.

Author: Viktoria Boeker

Journal: Cell Reports Medicine

Year: 2025

Podcast type: Short

The authors are:

• Viktoria Boeker
• Raghu Kalluri

Affiliations:

Viktoria Boeker, Raghu Kalluri, Department of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA

Raghu Kalluri, Department of Bioengineering, Rice University, Houston, TX, USA ,Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA , Department of Pathology, University of Texas Medical Branch, Galveston, TX, USA

This article "PLAMseq enables the proteo-genomic characterization of chromatin-associated proteins and protein interactions in a single workflow" is published in Science Advances.

Author: Lourdes González-Vinceiro

Journal: Science Advances

Year: 2025

Podcast type: Short

The authors are:

• Lourdes González-Vinceiro
• Carmen Espejo-Serrano
• María Eugenia Soler-Oliva
• Emily Soto-Hidalgo
• María Luisa Mateos-Martín
• Daniel Rico
• Cristina González-Aguilera
• Román González-Prieto

Affiliations:

Lourdes González-Vinceiro, Carmen Espejo-Serrano, María Eugenia Soler-Oliva, Emily Soto-Hidalgo, María Luisa Mateos-Martín, Cristina González-Aguilera, Román González-Prieto, Andalusian Center for Molecular Biology and Regenerative Medicine (CABIMER), Seville, Spain

Daniel Rico, Román González-Prieto, Institute of Biomedicine of Seville (IBIS), Seville, Spain

Daniel Rico, Newcastle University, Newcastle upon Tyne, UK