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This article "Squidiff: predicting cellular development and responses to perturbations using a diffusion model" is published in Nature Methods.

Author: Siyu He

Journal: Nature Methods

Year: 2025

Podcast type: Short

The authors are:

• Siyu He
• Yuefei Zhu
• Daniel Naveed Tavakol
• Haotian Ye
• Yeh-Hsing Lao
• Zixian Zhu
• Cong Xu
• Shradha Chauhan
• Guy Garty
• Raju Tomer
• Gordana Vunjak-Novakovic
• James Zou
• Elham Azizi
• Kam W. Leong

Affiliations:

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol, Yeh-Hsing Lao, Zixian Zhu, Cong Xu, Raju Tomer, Gordana Vunjak-Novakovic, Elham Azizi, Kam W. Leong, Department of Biomedical Engineering, Columbia University, New York, NY, USA

Siyu He, Elham Azizi, Irving Institute for Cancer Dynamics, Columbia University, New York, NY, USA

Siyu He, James Zou, Department of Biomedical Data Science, Stanford University, Stanford, CA, USA

Haotian Ye, James Zou, Department of Computer Sciences, Stanford University, Stanford, CA, USA

Yeh-Hsing Lao, Department of Pharmaceutical Sciences, University at Buffalo, Buffalo, NY, USA

Shradha Chauhan, Raju Tomer, Department of Biological Sciences, Columbia University, New York, NY, USA

Guy Garty, Center for Radiological Research, Columbia University, New York, NY, USA

Gordana Vunjak-Novakovic, Elham Azizi, Herbert Irving Comprehensive Cancer Center, Columbia University, New York, NY, USA

James Zou, Department of Electrical Engineering, Stanford University, Stanford, CA, USA

Elham Azizi, Department of Computer Sciences, Columbia University, New York, NY, USA

Elham Azizi, Data Science Institute, Columbia University, New York, NY, USA

Kam W. Leong, Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA

Siyu He, Yuefei Zhu, Daniel Naveed Tavakol, These authors contributed equally.

This article "Epigenetically driven and early immune evasion in colorectal cancer evolution" is published in Nature Genetics.

Author: Eszter Lakatos

Journal: Nature Genetics

Year: 2025

Podcast type: Short

The authors are:

• Eszter Lakatos
• Vinaya Gunasri
• Luis Zapata
• Jacob Househam
• Timon Heide
• Nicholas Trahearn
• Ottilie Swinyard
• Luis Cisneros
• Claire Lynn
• Maximilian Mossner
• Chris Kimberley
• Inmaculada Spiteri
• George D. Cresswell
• Gerard Llibre-Palomar
• Miriam Mitchison
• Carlo C. Maley
• Marnix Jansen
• Manuel Rodriguez-Justo
• John Bridgewater
• Ann-Marie Baker
• Andrea Sottoriva
• Trevor A. Graham

Affiliations:

Eszter Lakatos, Luis Zapata, Jacob Househam, Timon Heide, Nicholas Trahearn, Claire Lynn, Maximilian Mossner, Inmaculada Spiteri, George D. Cresswell, Ann-Marie Baker, Andrea Sottoriva, Trevor A. Graham, Evolutionary and Cancer Genomics Laboratory, The Institute of Cancer Research, London, UK

Vinaya Gunasri, Nicholas Trahearn, Marnix Jansen, Manuel Rodriguez-Justo, John Bridgewater, University College London, London, UK

Ottilie Swinyard, Chris Kimberley, Gerard Llibre-Palomar, Barts Cancer Institute, Queen Mary University of London, London, UK

Luis Cisneros, Carlo C. Maley, Arizona State University, Tempe, AZ, USA

Miriam Mitchison, University of Cambridge, Cambridge, UK

This article "RNA stability enhancers for durable base-modified mRNA therapeutics" is published in Nature Biotechnology.

Author: Soo-Jin Jung

Journal: Nature Biotechnology

Year: 2025

Podcast type: Short

The authors are:

• Soo-Jin Jung
• Jenny J. Seo
• Sunghan Lee
• Seong-In Hyun
• Ji-eun Lee
• Sojeong Lee
• Yeji Lee
• Hyeshik Chang
• Hyukjin Lee
• Jin-Hong Kim
• V. Narry Kim

Affiliations:

Soo-Jin Jung, Jenny J. Seo, Sunghan Lee, Seong-In Hyun, Ji-eun Lee, Sojeong Lee, Hyeshik Chang, Jin-Hong Kim, V. Narry Kim,

Center for RNA Research, Institute for Basic Science, Seoul, Republic of Korea; School of Biological Sciences, Seoul National University, Seoul, Republic of Korea

Yeji Lee, Hyukjin Lee, College of Pharmacy, Seoul National University, Seoul, Republic of Korea

Jenny J. Seo, Department of Microbiology, Harvard Medical School, Boston, MA, USA

This article "Insights into the relevance of targeting fibroblasts to control cancer" is published in Cell Reports Medicine.

Author: Viktoria Boeker

Journal: Cell Reports Medicine

Year: 2025

Podcast type: Short

The authors are:

• Viktoria Boeker
• Raghu Kalluri

Affiliations:

Viktoria Boeker, Raghu Kalluri, Department of Cancer Biology, University of Texas MD Anderson Cancer Center, Houston, TX, USA

Raghu Kalluri, Department of Bioengineering, Rice University, Houston, TX, USA ,Department of Electrical and Computer Engineering, Rice University, Houston, TX, USA, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, USA , Department of Pathology, University of Texas Medical Branch, Galveston, TX, USA

This article "PLAMseq enables the proteo-genomic characterization of chromatin-associated proteins and protein interactions in a single workflow" is published in Science Advances.

Author: Lourdes González-Vinceiro

Journal: Science Advances

Year: 2025

Podcast type: Short

The authors are:

• Lourdes González-Vinceiro
• Carmen Espejo-Serrano
• María Eugenia Soler-Oliva
• Emily Soto-Hidalgo
• María Luisa Mateos-Martín
• Daniel Rico
• Cristina González-Aguilera
• Román González-Prieto

Affiliations:

Lourdes González-Vinceiro, Carmen Espejo-Serrano, María Eugenia Soler-Oliva, Emily Soto-Hidalgo, María Luisa Mateos-Martín, Cristina González-Aguilera, Román González-Prieto, Andalusian Center for Molecular Biology and Regenerative Medicine (CABIMER), Seville, Spain

Daniel Rico, Román González-Prieto, Institute of Biomedicine of Seville (IBIS), Seville, Spain

Daniel Rico, Newcastle University, Newcastle upon Tyne, UK

This article "Genomic diversity of non-typhoidal Salmonella found in patients suffering from gastroenteritis in Norfolk, UK" is published in Microbial Genomics.

Author: Steven J. Rudder

Journal: Microbial Genomics

Year: 2025

Podcast type: Short

The authors are:

• Steven J. Rudder
• Bilal Djeghout
• Ngozi Elumogo
• Nicol Janecko
• Gemma C. Langridge

Affiliations:

Steven J. Rudder, Bilal Djeghout, Nicol Janecko, Gemma C. Langridge, Quadram Institute Bioscience, Rosalind Franklin Rd, Norwich Research Park, Norwich NR4 7UQ, UK

Steven J. Rudder, Bilal Djeghout, Nicol Janecko, Gemma C. Langridge, Centre for Microbial Interactions, Rosalind Franklin Rd, Norwich Research Park, Norwich NR4 7UQ, UK

Ngozi Elumogo, Eastern Pathology Alliance, Norfolk and Norwich University Hospital, Norwich NR4 7UY, UK

This article "Ancient origin of an urban underground mosquito" is published in Mosquito Genetics.

Author: Yuki Haba

Journal: Mosquito Genetics

Year: 2024

Podcast type: Short

The authors are:

• Yuki Haba
• PIPPOP Consortium
• Petra Korlević
• Erica McAlister
• Mara K. N. Lawniczak
• Molly Schumer
• Noah H. Rose
• Carolyn S. McBride

Affiliations:

Yuki Haba, Noah H. Rose, Carolyn S. McBride, Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA

Petra Korlević, Mara K. N. Lawniczak, Wellcome Sanger Institute, Hinxton, UK

Erica McAlister, Natural History Museum, London, UK

Molly Schumer, Department of Biology, Stanford University, Stanford, CA, USA

This article “Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo” is published in The EMBO Journal.

Author: Erik Holmqvist

Journal: The EMBO Journal

Year: 2016

Podcast type: Short

The authors are:

⦁ Erik Holmqvist

⦁ Patrick R. Wright

⦁ Lei Li

⦁ Thorsten Bischler

⦁ Lars Barquist

⦁ Richard Reinhardt

⦁ Rolf Backofen

⦁ Jörg Vogel

Affiliations:

Erik Holmqvist, Lei Li, Thorsten Bischler, Lars Barquist, Jörg Vogel, Institute for Molecular Infection Biology, University of Würzburg, Würzburg, Germany

Patrick R. Wright, Rolf Backofen, Bioinformatics Group, Department of Computer Science, Albert Ludwig University Freiburg, Freiburg, Germany

Rolf Backofen, BIOSS Centre for Biological Signaling Studies, University of Freiburg, Freiburg, Germany

Richard Reinhardt, Max Planck Genome Centre Cologne, Max Planck Institute for Plant Breeding Research, Cologne, Germany

This article “Resolving host–pathogen interactions by dual RNA-seq” is published in PLOS Pathogens.

Author: Alexander J. Westermann

Journal: PLOS Pathogens

Year: 2017

Podcast type: Short

The authors are:

⦁ Alexander J. Westermann

⦁ Lars Barquist

⦁ Jörg Vogel

Affiliations:

Alexander J. Westermann, Lars Barquist, Jörg Vogel, RNA Biology Group, Institute for Molecular Infection Biology, University of Würzburg, Würzburg, Germany

Jörg Vogel, Helmholtz Institute for RNA-based Infection Research (HIRI), Würzburg, Germany

This article “Dual RNA-seq unveils noncoding RNA functions in host–pathogen interactions” is published in Nature.

Author: Alexander J. Westermann

Journal: Nature

Year: 2016

Podcast type: Short

The authors are:

⦁ Alexander J. Westermann

⦁ Konrad U. Förstner

⦁ Fabian Amman

⦁ Lars Barquist

⦁ Yanjie Chao

⦁ Leon N. Schulte

⦁ Lydia Müller

⦁ Richard Reinhardt

⦁ Peter F. Stadler

⦁ Jörg Vogel

Affiliations:

Alexander J. Westermann, Konrad U. Förstner, Lars Barquist, Yanjie Chao, Leon N. Schulte, Jörg Vogel, University of Würzburg, RNA Biology Group, Institute for Molecular Infection Biology, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany

Konrad U. Förstner, University of Würzburg, Core Unit Systems Medicine, Josef-Schneider-Straße 2/D15, D-97080 Würzburg, Germany

Fabian Amman, Lydia Müller, Peter F. Stadler, University of Leipzig, Department of Computer Science and Interdisciplinary Center for Bioinformatics, Härtelstraße 16–18, D-04107 Leipzig, Germany

Fabian Amman, Peter F. Stadler, University of Vienna, Theoretical Biochemistry Group, Institute for Theoretical Chemistry, Währinger Straße 17, A-1090 Vienna, Austria

Richard Reinhardt, Max Planck Genome Centre Cologne, Max Planck Institute for Plant Breeding Research, Carl-von-Linné-Weg 10, D-50829 Cologne, Germany

Peter F. Stadler, Max Planck Institute for Mathematics in the Sciences, Inselstraße 22, D-04103 Leipzig, Germany

Peter F. Stadler, Santa Fe Institute, 1399 Hyde Park Rd, Santa Fe, New Mexico 87501, USA

Jörg Vogel, Research Centre for Infectious Diseases (ZINF), University of Würzburg, D-97070 Würzburg, Germany