In the year after the Saint's repose both the Emperor Arcadius and his wife Eudoxia, who had been most responsible for St John's exile, died. Their son Theodosius II succeeded to the throne. Soon most of the exiled supporters of St John were restored to their sees. In 434 St Proclus, a disciple of St John Chrysostom, was made Archbishop of Constantinople, and persuaded the Emperor to have St John's relics solemnly translated from Comana to Constantinople. But all efforts to disinter his remains failed, as if his coffin were sealed in the earth. Learning of this, the Emperor wrote a letter to St John asking forgiveness for his father's persecution, and pleading with him to agree to return to the Imperial City for the benefit of the faithful. As soon as this letter was placed over the Saint's tomb, his coffin was removed with no difficulty and conveyed solemnly to Constantinople.

When the cortege reached Constantinople, the Emperor met it and prostrated himself before it, once again begging the Saint's forgiveness for the sins of the State against him. At last, the relics were deposited beneath the altar of the Church of the Holy Apostles, where they worked many miracles during the celebration of the Liturgy. Since then, the relics have been scattered throughout the world, where they never fail to reveal the Saint's loving presence.