the bioinformatics lab

Ep5 Public Health Perspective


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Kevin Libuit began his career in public health bioinformatics in Virginia, USA, while Andrew Page's experience mainly leans towards the academic side.
Differences between Academia and Public Health:
- Academia is flexible, allows for experimentation, and tends to focus on niche, blue-sky research.
- Public health emphasizes quality, validation, reproducibility, and the impact on real-world actions, such as informing government responses or legal actions related to health concerns.
Tool Development and Use:
- Academia often reinvents tools, leading to many solutions for the same problem.
- Public health focuses on the implementation and consistent use of tools for actionable insights.
- Challenges arise when academic tools are left unsupported after their initial development, whereas public health relies on long-term tool support.
- Containerization, like Docker, helps maintain a consistent and reproducible tool environment.
Training and Workforce:
- Academia tends to be cutting-edge, while public health focuses on stability and intent.
- Upskilling public health scientists to use bioinformatics tools is crucial, often emphasizing tool usage rather than deep technical understanding.
Collaboration:
- Close collaboration between academia and public health yields the best outcomes.
- Such collaborations help in aligning the innovation from the academic world with the real-world applications in public health.
Publication:
- Manuscripts pull together all elements of a study, ensuring clarity, validity, and ease of implementation across different labs. They help translate work from one public health lab to another.
Conclusion: The episode delved into the distinctions and overlaps between academic and public health bioinformatics, highlighting the importance of collaboration and communication between the two realms.
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