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David Krakauer is the president of the Santa Fe Institute, where their mission is officially "Searching for Order in the Complexity of Evolving Worlds." When I think of the Santa Fe institute, I think of complexity science, because that is the common thread across the many subjects people study at SFI, like societies, economies, brains, machines, and evolution. David has been on before, and I invited him back to discuss some of the topics in his new book The Complex World: An Introduction to the Fundamentals of Complexity Science.

The book on the one hand serves as an introduction and a guide to a 4 volume collection of foundational papers in complexity science, which you'll David discuss in a moment. On the other hand, The Complex World became much more, discussing and connecting ideas across the history of complexity science. Where did complexity science come from? How does it fit among other scientific paradigms? How did the breakthroughs come about? Along the way, we discuss the four pillars of complexity science - entropy, evolution, dynamics, and computation, and how complexity scientists draw from these four areas to study what David calls "problem-solving matter." We discuss emergence, the role of time scales, and plenty more all with my own self-serving goal to learn and practice how to think like a complexity scientist to improve my own work on how brains do things. Hopefully our conversation, and David's book, help you do the same.

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Eli Sennesh is a postdoc at Vanderbilt University, one of my old stomping grounds, currently in the lab of Andre Bastos. Andre’s lab focuses on understanding brain dynamics within cortical circuits, particularly how communication between brain areas is coordinated in perception, cognition, and behavior. So Eli is busy doing work along those lines, as you'll hear more about. But the original impetus for having him on his recently published proposal for how predictive coding might be implemented in brains. So in that sense, this episode builds on the last episode with Rajesh Rao, where we discussed Raj's "active predictive coding" account of predictive coding.  As a super brief refresher, predictive coding is the proposal that the brain is constantly predicting what's about the happen, then stuff happens, and the brain uses the mismatch between its predictions and the actual stuff that's happening, to learn how to make better predictions moving forward. I refer you to the previous episode for more details. So Eli's account, along with his co-authors of course, which he calls "divide-and-conquer" predictive coding, uses a probabilistic approach in an attempt to account for how brains might implement predictive coding, and you'll learn more about that in our discussion. But we also talk quite a bit about the difference between practicing theoretical and experimental neuroscience, and Eli's experience moving into the experimental side from the theoretical side.

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Today I'm in conversation with Rajesh Rao, a distinguished professor of computer science and engineering at the University of Washington, where he also co-directs the Center for Neurotechnology. Back in 1999, Raj and Dana Ballard published what became quite a famous paper, which proposed how predictive coding might be implemented in brains. What is predictive coding, you may be wondering? It's roughly the idea that your brain is constantly predicting incoming sensory signals, and it generates that prediction as a top-down signal that meets the bottom-up sensory signals. Then the brain computes a difference between the prediction and the actual sensory input, and that difference is sent back up to the "top" where the brain then updates its internal model to make better future predictions.

So that was 25 years ago, and it was focused on how the brain handles sensory information. But Raj just recently published an update to the predictive coding framework, one that incorporates actions and perception, suggests how it might be implemented in the cortex - specifically which cortical layers do what - something he calls "Active predictive coding." So we discuss that new proposal, we also talk about his engineering work on brain-computer interface technologies, like BrainNet, which basically connects two brains together, and like neural co-processors, which use an artificial neural network as a prosthetic that can do things like enhance memories, optimize learning, and help restore brain function after strokes, for example. Finally, we discuss Raj's interest and work on deciphering an ancient Indian text, the mysterious Indus script.

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Joe Monaco and Grace Hwang  co-organized a recent workshop I participated in, the 2024 BRAIN NeuroAI Workshop. You may have heard of the BRAIN Initiative, but in case not, BRAIN is is huge funding effort across many agencies, one of which is the National Institutes of Health, where this recent workshop was held. The BRAIN Initiative began in 2013 under the Obama administration, with the goal to support developing technologies to help understand the human brain, so we can cure brain based diseases.

BRAIN Initiative just became a decade old, with many successes like recent whole brain connectomes, and discovering the vast array of cell types. Now the question is how to move forward, and one area they are curious about, that perhaps has a lot of potential to support their mission, is the recent convergence of neuroscience and AI... or NeuroAI. The workshop was designed to explore how NeuroAI might contribute moving forward, and to hear from NeuroAI folks how they envision the field moving forward. You'll hear more about that in a moment.

That's one reason I invited Grace and Joe on. Another reason is because they co-wrote a position paper a while back that is impressive as a synthesis of lots of cognitive sciences concepts, but also proposes a specific level of abstraction and scale in brain processes that may serve as a base layer for computation. The paper is called Neurodynamical Computing at the Information Boundaries, of Intelligent Systems, and you'll learn more about that in this episode.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists.

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Sign up for the “Brain Inspired” email alerts to be notified every time a new “Brain Inspired” episode is released: https://www.thetransmitter.org/newsletters/

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Hessam Akhlaghpour is a postdoctoral researcher at Rockefeller University in the Maimon lab. His experimental work is in fly neuroscience mostly studying spatial memories in fruit flies. However, we are going to be talking about a different (although somewhat related) side of his postdoctoral research. This aspect of his work involves theoretical explorations of molecular computation, which are deeply inspired by Randy Gallistel and Adam King's book Memory and the Computational Brain. Randy has been on the podcast before to discuss his ideas that memory needs to be stored in something more stable than the synapses between neurons, and how that something could be genetic material like RNA. When Hessam read this book, he was re-inspired to think of the brain the way he used to think of it before experimental neuroscience challenged his views. It re-inspired him to think of the brain as a computational system. But it also led to what we discuss today, the idea that RNA has the capacity for universal computation, and Hessam's development of how that might happen. So we discuss that background and story, why universal computation has been discovered in organisms yet since surely evolution has stumbled upon it, and how RNA might and combinatory logic could implement universal computation in nature.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists.

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Sign up for the “Brain Inspired” email alerts to be notified every time a new “Brain Inspired” episode is released: https://www.thetransmitter.org/newsletters/

To explore more neuroscience news and perspectives, visit thetransmitter.org.

Tony Zador runs the Zador lab at Cold Spring Harbor Laboratory. You've heard him on Brain Inspired a few times in the past, most recently in a panel discussion I moderated at this past COSYNE conference - a conference Tony co-founded 20 years ago. As you'll hear, Tony's current and past interests and research endeavors are of a wide variety, but today we focus mostly on his thoughts on NeuroAI.

We're in a huge AI hype cycle right now, for good reason, and there's a lot of talk in the neuroscience world about whether neuroscience has anything of value to provide AI engineers - and how much value, if any, neuroscience has provided in the past.

Tony is team neuroscience. You'll hear him discuss why in this episode, especially when it comes to ways in which development and evolution might inspire better data efficiency, looking to animals in general to understand how they coordinate numerous objective functions to achieve their intelligent behaviors - something Tony calls alignment - and using spikes in AI models to increase energy efficiency.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists.

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Sign up for the “Brain Inspired” email alerts to be notified every time a new “Brain Inspired” episode is released.

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Karen Adolph runs the Infant Action Lab at NYU, where she studies how our motor behaviors develop from infancy onward. We discuss how observing babies at different stages of development illuminates how movement and cognition develop in humans, how variability and embodiment are key to that development, and the importance of studying behavior in real-world settings as opposed to restricted laboratory settings. We also explore how these principles and simulations can inspire advances in intelligent robots. Karen has a long-standing interest in ecological psychology, and she shares some stories of her time studying under Eleanor Gibson and other mentors.

Finally, we get a surprise visit from her partner Mark Blumberg, with whom she co-authored an opinion piece arguing that "motor cortex" doesn't start off with a motor function, oddly enough, but instead processes sensory information during the first period of animals' lives.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists. 

This is the second conversation I had while teamed up with Gaute Einevoll at a workshop on NeuroAI in Norway. In this episode, Gaute and I are joined by Cristina Savin and Tim Vogels. Cristina shares how her lab uses recurrent neural networks to study learning, while Tim talks about his long-standing research on synaptic plasticity and how AI tools are now helping to explore the vast space of possible plasticity rules.

We touch on how deep learning has changed the landscape, enhancing our research but also creating challenges with the "fashion-driven" nature of science today. We also reflect on how these new tools have changed the way we think about brain function without fundamentally altering the structure of our questions.

Be sure to check out Gaute's Theoretical Neuroscience podcast as well!

Read the transcript, provided by The Transmitter.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists.

This is the first of two less usual episodes. I was recently in Norway at a NeuroAI workshop called Validating models: How would success in NeuroAI look like? What follows are a few recordings I made with my friend Gaute Einevoll. Gaute has been on this podcast before, but more importantly he started his own podcast a while back called Theoretical Neuroscience, which you should check out.

Gaute and I introduce the episode, then briefly speak with Mikkel Lepperød, one of the organizers of the workshop. In this first episode, we're then joined by Ken Harris and Andreas Tolias to discuss how AI has influenced their research, thoughts about brains and minds, and progress and productivity.

Read the transcript, provided by The Transmitter.

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The Transmitter is an online publication that aims to deliver useful information, insights and tools to build bridges across neuroscience and advance research. Visit thetransmitter.org to explore the latest neuroscience news and perspectives, written by journalists and scientists. 

The Transmitter has provided a transcript for this episode.

Vijay Namoodiri runs the Nam Lab at the University of California San Francisco, and Ali Mojebi is an assistant professor at the University of Wisconsin-Madison. Ali as been on the podcast before a few times, and he's interested in how neuromodulators like dopamine affect our cognition. And it was Ali who pointed me to Vijay, because of some recent work Vijay has done reassessing how dopamine might function differently than what has become the classic story of dopamine's function as it pertains to learning. The classic story is that dopamine is related to reward prediction errors. That is, dopamine is modulated when you expect reward and don't get it, and/or when you don't expect reward but do get it. Vijay calls this a "prospective" account of dopamine function, since it requires an animal to look into the future to expect a reward. Vijay has shown, however, that a retrospective account of dopamine might better explain lots of know behavioral data. This retrospective account links dopamine to how we understand causes and effects in our ongoing behavior. So in this episode, Vijay gives us a history lesson about dopamine, his newer story and why it has caused a bit of controversy, and how all of this came to be.

I happened to be looking at the Transmitter the other day, after I recorded this episode, and low and behold, there was an article titles Reconstructing dopamine’s link to reward. Vijay is featured in the article among a handful of other thoughtful researchers who share their work and ideas about this very topic. Vijay wrote his own piece as well: Dopamine and the need for alternative theories. So check out those articles for more views on how the field is reconsidering how dopamine works.

Read the transcript, produced by The Transmitter.

0:00 - Intro